View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_11 (Length: 549)
Name: NF0784_low_11
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 32 - 540
Target Start/End: Complemental strand, 50595190 - 50594685
Alignment:
| Q |
32 |
atgaagtcatatcaagttttatttttgtgaatgaaaagagttaaaagcttaaaggacaaacaaactaaaatccaagaagaagaacgacagtcacaaagga |
131 |
Q |
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| T |
50595190 |
atgaagtcatatcaagttttatttttgtgaatgaaaagagttaaaagcttaaaggacaaacaaactaaaatccaagaagaagaaggacagtcacaaagga |
50595091 |
T |
|
| Q |
132 |
aagtgggagaaacataggagttgcatcaaatatcctacaacccaaatcaaaggaaagctctaaatttgtcatggtatcaaccac-tgttttcaccaacca |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50595090 |
aagtgggagaaacataggagttgcatcaaatatcctacaacccaaatcaaaggaaagctctaaatttgtcatggtatcaaccacttgttttcaccaacca |
50594991 |
T |
|
| Q |
231 |
cttccaattaacacataaaaattatcactaatactcataaccacaagactcttaccacataactaatactattattttaacattaaccatgactacaagc |
330 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
50594990 |
cttccaattaacacataaaaattatcactaatactcataaccacaagactcttaccacacaactaatactattattttaacattaaccatgactacaggc |
50594891 |
T |
|
| Q |
331 |
nnnnnnntttcatatactatattaagtaattaagtaatacattgttcataacatggataaatccacttatttatatttagatttataattaagtgataca |
430 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
50594890 |
aaaaaaaattcatatgc--tattaagtaattaagtaatacattgttcataacatggataaatccacttatt--tatttagatttttaattaagtgataca |
50594795 |
T |
|
| Q |
431 |
atacaaacatgatttttaactctcactttatggtcctccatgcatgcttttttattcatcaaaacttgtttttgtaccaataaacacccttttgagatgt |
530 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50594794 |
atacaaacatgatttttaactctcactttatggtcctccatgcatgcttttttattcatcaaaacttgtttttgtaccaataaacacccttttgagatgt |
50594695 |
T |
|
| Q |
531 |
tccttcatct |
540 |
Q |
| |
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|||||||||| |
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| T |
50594694 |
tccttcatct |
50594685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 403
Target Start/End: Complemental strand, 1897455 - 1897410
Alignment:
| Q |
358 |
aattaagtaatacattgttcataacatggataaatccacttattta |
403 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1897455 |
aatttagtaatacattgttcataacatggacaaatccacttattta |
1897410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 540
Target Start/End: Complemental strand, 1897343 - 1897284
Alignment:
| Q |
481 |
tttattcatcaaaacttgtttttgtaccaataaacacccttttgagatgttccttcatct |
540 |
Q |
| |
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|||||||||||||||||||| || |||||||| | ||||||||||||||| ||||||| |
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| T |
1897343 |
tttattcatcaaaacttgttcatggaccaataattaaccttttgagatgttctttcatct |
1897284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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