View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_114 (Length: 264)
Name: NF0784_low_114
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_114 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 5964608 - 5964351
Alignment:
| Q |
1 |
ttatttaggtattttgtctcgatgcaagttaaagaacaaaatcctataatgacgtaaatcaatcaaatttttatttctatccatagagtcgtattttgat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5964608 |
ttatttaggtattttgtctcgatgcaagttaaagaacaaaatcctataatgacgtaaatcaatcaaacttttatttctatccatagagtcgtattttgat |
5964509 |
T |
|
| Q |
101 |
ttgatacaaaattaaatccatttgatacgaatctttattgtctatctatatctatattggaaatgaatctcatcttgagtccgattcattatgatgagtc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5964508 |
ttgatacaaaattaaatccatttgatacgaatctttattgtatatctatatctatattggaaatgaatctcatcttgagtccgattcattatgatgagtc |
5964409 |
T |
|
| Q |
201 |
ctgattcattagaatgaatcactacctaaactcagaatagccagccacttcttttctg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5964408 |
ctgattcattagaatgaatcactacctaaactcagaatagccagccacttcttttctg |
5964351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 231
Target Start/End: Complemental strand, 8967000 - 8966932
Alignment:
| Q |
164 |
tgaatctcatcttgagtcc-gattcattatgatgagtcctgattcattagaatgaatcactacctaaac |
231 |
Q |
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|||||||||||| || ||| ||||||||||||||| || ||||||| ||||||||||||||||||| |
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| T |
8967000 |
tgaatctcatctcgaatccagattcattatgatgaatctcaattcattctaatgaatcactacctaaac |
8966932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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