View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_12 (Length: 531)

Name: NF0784_low_12
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_12
NF0784_low_12
[»] chr8 (5 HSPs)
chr8 (84-441)||(44753419-44753780)
chr8 (202-440)||(21833859-21834102)
chr8 (289-440)||(25554393-25554549)
chr8 (289-440)||(25559272-25559428)
chr8 (291-376)||(5010548-5010633)
[»] chr4 (1 HSPs)
chr4 (199-502)||(20502378-20502686)
[»] scaffold0320 (1 HSPs)
scaffold0320 (199-431)||(11066-11303)
[»] scaffold0139 (1 HSPs)
scaffold0139 (199-440)||(3622-3868)
[»] scaffold0909 (1 HSPs)
scaffold0909 (342-523)||(4082-4268)
[»] chr6 (6 HSPs)
chr6 (379-524)||(20091564-20091709)
chr6 (202-440)||(19012526-19012769)
chr6 (202-440)||(19020158-19020401)
chr6 (205-431)||(16687599-16687830)
chr6 (202-330)||(22466687-22466815)
chr6 (350-440)||(22466587-22466682)
[»] chr7 (4 HSPs)
chr7 (199-440)||(23523147-23523393)
chr7 (9-92)||(40254855-40254938)
chr7 (199-440)||(11543718-11543964)
chr7 (291-376)||(12530218-12530303)
[»] chr3 (4 HSPs)
chr3 (385-527)||(14432454-14432596)
chr3 (199-440)||(95443-95689)
chr3 (199-431)||(14561735-14561972)
chr3 (202-440)||(5194567-5194810)
[»] scaffold0202 (1 HSPs)
scaffold0202 (202-440)||(11243-11486)
[»] chr1 (3 HSPs)
chr1 (289-440)||(547002-547158)
chr1 (289-440)||(12099518-12099674)
chr1 (199-431)||(20436107-20436344)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 84 - 441
Target Start/End: Complemental strand, 44753780 - 44753419
Alignment:
Q  84 ctattccacttcatttcacatttcgtcgcttccgatccatccccttgcttactttctgcctttgatcgttcgcacatcttcaggtattcttctcgttcnn 183  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||      
T  44753780 ctattccacttcatttcacatttcgtcgcttccgatccatcctcttgcttactttccgcctttgatcgttcgcgcatcttcgggtattcttctcgttctt 44753681  T
Q  184 nnnnnnnnnnnnnnngtatatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgag 283  Q
                   ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44753680 tttcttttcttttttgtatatccatggtagtgat-agggagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacagaggttgag 44753582  T
Q  284 attagagtgtttaaaacatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccg----atc- 378  Q
    |||||||||||||||||||||||||||| ||   ||||||||||||||||| |||||||| |||||||| ||||||||||||| ||||||||    |||     
T  44753581 attagagtgtttaaaacatgccactcgaaaaggtggtttaatcgattgggaggcgtatgactctagttattttggtcatatgactttctccgacatatct 44753482  T
Q  379 agcgaaagcgactgtagtgaatctgatgatagtgactgtgttttgctatattcgacttcaggg 441  Q
    ||||| || |||||||||||||||||||||||||||||| ||||||||||||| || ||||||    
T  44753481 agcgagagtgactgtagtgaatctgatgatagtgactgtattttgctatattcaacctcaggg 44753419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 202 - 440
Target Start/End: Complemental strand, 21834102 - 21833859
Alignment:
Q  202 tatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaaaca 301  Q
    |||||||||||||  ||||| |||||||||||||||||| |||| ||   || |||||||| ||||| || |||| |||||||||| | ||||| |||||    
T  21834102 tatccatggtagtagttagggagtgtgatgagaaagggatagaactagtaccttcgaatcccttagacaggcaaaagttgagattacaatgtttgaaaca 21834003  T
Q  302 tgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccg----atc-agcgaaagcgactgtagt 396  Q
    |||||||||| |||| ||||||||||||||||| | ||| ||||||| ||||||| ||||||||| ||||||||    ||| ||||| || ||||||||     
T  21834002 tgccactcgaaaaaatggtttaatcgattgggaggtgtacgattctacttactttagtcatatgaatttctccgacatatctagcgagagtgactgtagc 21833903  T
Q  397 gaatctgatgatagtgactgtgttttgctatattcgacttcagg 440  Q
    ||||||||||||||||||||||||||  ||||||| || |||||    
T  21833902 gaatctgatgatagtgactgtgttttattatattcaacctcagg 21833859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 440
Target Start/End: Complemental strand, 25554549 - 25554393
Alignment:
Q  289 agtgtttaaaacatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccga----tc-agcga 383  Q
    |||||||||| ||||| |||||| |||||||||||||||||||| ||| ||||||||| | ||| ||| |||| |||| |||||||||    || |||||    
T  25554549 agtgtttaaatcatgcgactcgaaaaaacggtttaatcgattggaaagtgtatgattccacttattttagtcacatgactttctccgacatttcgagcga 25554450  T
Q  384 aagcgactgtagtgaatctgatgatagtgactgtgttttgctatattcgacttcagg 440  Q
     || |||||||| || ||||| |||||||||||||||||||||||||| || |||||    
T  25554449 gagtgactgtagcgattctgacgatagtgactgtgttttgctatattcaacctcagg 25554393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 289 - 440
Target Start/End: Complemental strand, 25559428 - 25559272
Alignment:
Q  289 agtgtttaaaacatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccga----tc-agcga 383  Q
    |||||||||| ||||| |||||| |||||||||||||||||||| ||| ||||||||| | ||| ||| |||| |||| |||||||||    || |||||    
T  25559428 agtgtttaaatcatgcgactcgaaaaaacggtttaatcgattggaaagtgtatgattccacttattttagtcacatgactttctccgacatttcgagcga 25559329  T
Q  384 aagcgactgtagtgaatctgatgatagtgactgtgttttgctatattcgacttcagg 440  Q
     || |||||||| || ||||| |||||||||||||||||||||||||| || |||||    
T  25559328 gagtgactgtagcgattctgacgatagtgactgtgttttgctatattcaacctcagg 25559272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 291 - 376
Target Start/End: Original strand, 5010548 - 5010633
Alignment:
Q  291 tgtttaaaacatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccga 376  Q
    ||||| || ||||| |||| | |||| ||||||||||||||| ||| ||||||||| | ||| ||| ||||||||| |||||||||    
T  5010548 tgtttgaatcatgcaactcaaaaaaatggtttaatcgattggaaagtgtatgattccacttattttagtcatatgactttctccga 5010633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 199 - 502
Target Start/End: Complemental strand, 20502686 - 20502378
Alignment:
Q  199 gtatatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaa 298  Q
    ||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| |||||||||| ||||   ||||| |||||||| ||||    
T  20502686 gtatatctatggtagtgattagggagtgtgatgagagagggaaagaattacccccctcgaattctttagataggcaaaaactgagactagagtgtctaaa 20502587  T
Q  299 acatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccgat-----cagcgaaagcgactgt 393  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||      || || |||||||||    
T  20502586 acatgccactcgaaaaaatggtttaatcgattgggaggcgtatgattctagttactttggtcatatgactttctccgatatatctagtgagagcgactgt 20502487  T
Q  394 agtgaatctgatgatagtgactgtgttttgctatattcgacttcagggagtcatccgggaggagacgttctcaccatttctccttctaaaatggttcgtg 493  Q
    ||||||||||||||||||||||||||||| |||||||| || ||||    | || | |||  ||| ||| || | ||||| ||||||||||||||||| |    
T  20502486 agtgaatctgatgatagtgactgtgttttactatattcaacctcagaagataattctggaaaagaagttgtcgctatttccccttctaaaatggttcgcg 20502387  T
Q  494 gaaaaggta 502  Q
    |||||||||    
T  20502386 gaaaaggta 20502378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 199 - 431
Target Start/End: Complemental strand, 11303 - 11066
Alignment:
Q  199 gtatatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaa 298  Q
    ||||||| |||||||| |||||| | |||||||||| ||||| | || ||||||| |||||||||| |||||| |||| | |||||||||| ||||||||    
T  11303 gtatatctatggtagtaattagggaatgtgatgagagagggaaataactacccccttcgaatccttcagataggcaaaagctgagattagaatgtttaaa 11204  T
Q  299 acatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccgat-----cagcgaaagcgactgt 393  Q
    ||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||      ||||| || ||||||    
T  11203 acatgccactcgaaaaaatggtttaatcgattgggaggcgtatgattctagttactttggtcatatgattttctctgatatatctagcgagagtgactgt 11104  T
Q  394 agtgaatctgatgatagtgactgtgttttgctatattc 431  Q
    ||||||| |||||||||||||| ||||||  |||||||    
T  11103 agtgaatatgatgatagtgactatgttttagtatattc 11066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 115; Significance: 4e-58; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 199 - 440
Target Start/End: Original strand, 3622 - 3868
Alignment:
Q  199 gtatatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaa 298  Q
    |||||||||||||||| |||||| | |||||||||| |||||||||| |||| || |||||||||||||| || |||| |||||||||||| || || ||    
T  3622 gtatatccatggtagtaattagggaatgtgatgagagagggagagaactacctccttcgaatcctttagacaggcaaaagttgagattagaatgcttgaa 3721  T
Q  299 acatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccgat-----cagcgaaagcgactgt 393  Q
    ||||||||||||| |||| ||||||||||||||||| | ||||||||||||||||||| ||||||||| ||||||||||      ||||| || ||||||    
T  3722 acatgccactcgaaaaaatggtttaatcgattgggaggtgtatgattctagttactttagtcatatgaatttctccgatatatctagcgagagtgactgt 3821  T
Q  394 agtgaatctgatgatagtgactgtgttttgctatattcgacttcagg 440  Q
    || ||||||||||||||| ||||||||||  ||||||| || |||||    
T  3822 agcgaatctgatgatagtaactgtgttttattatattcaacctcagg 3868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0909 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: scaffold0909
Description:

Target: scaffold0909; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 342 - 523
Target Start/End: Complemental strand, 4268 - 4082
Alignment:
Q  342 gattctagttactttggtcatatgattttctccgatc-----agcgaaagcgactgtagtgaatctgatgatagtgactgtgttttgctatattcgactt 436  Q
    |||||||||||||| ||||| |||| ||||||||||      ||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||    
T  4268 gattctagttacttcggtcacatgactttctccgatatatctagcgagagcgattgtagtgaatctgacgatagtgattgtgttttgctatattcgactt 4169  T
Q  437 cagggagtcatccgggaggagacgttctcaccatttctccttctaaaatggttcgtggaaaaggtagccgtattgcatgtcctgaat 523  Q
    ||||||||||||||||| |||||||| |||||||||| |||||||| |||||||| |||||||||| ||||||||||||||||||||    
T  4168 cagggagtcatccgggaagagacgttatcaccatttccccttctaagatggttcgcggaaaaggtaaccgtattgcatgtcctgaat 4082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 379 - 524
Target Start/End: Original strand, 20091564 - 20091709
Alignment:
Q  379 agcgaaagcgactgtagtgaatctgatgatagtgactgtgttttgctatattcgacttcagggagtcatccgggaggagacgttctcaccatttctcctt 478  Q
    ||||| ||||| ||||| |||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  20091564 agcgagagcgattgtagcgaatctgaagatagtgattgtgttttgctatatttgacttcagggagtcatccgggaggagacgttctcgccatttctcctt 20091663  T
Q  479 ctaaaatggttcgtggaaaaggtagccgtattgcatgtcctgaatc 524  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||    
T  20091664 ctaaaatggttcgcggaaaaggtagccgtattgcatgtcttgaatc 20091709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 202 - 440
Target Start/End: Original strand, 19012526 - 19012769
Alignment:
Q  202 tatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaaaca 301  Q
    |||||||||||||  ||||| |||||||||||| |||||||||| |||| || ||||| ||||||||||| ||||   |||||||  | ||||| || ||    
T  19012526 tatccatggtagtagttagggagtgtgatgagagagggagagaactacctccatcgaaccctttagataggcaaaaactgagattgcaatgtttgaagca 19012625  T
Q  302 tgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccgat-----cagcgaaagcgactgtagt 396  Q
    |||||||||||  |  ||||||||||||||| | | ||| |||| || ||| ||| | ||||||| ||||||||||      ||||| || |||||||||    
T  19012626 tgccactcgagggagtggtttaatcgattggaaggtgtacgattatacttattttagccatatgactttctccgatatttctagcgagagtgactgtagt 19012725  T
Q  397 gaatctgatgatagtgactgtgttttgctatattcgacttcagg 440  Q
    |||| |||||||||||||||||||||||||||||| || |||||    
T  19012726 gaatatgatgatagtgactgtgttttgctatattcaacctcagg 19012769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 202 - 440
Target Start/End: Original strand, 19020158 - 19020401
Alignment:
Q  202 tatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaaaca 301  Q
    |||||||| ||||  ||||| |||||||||||| |||||||||| |||| || ||||| ||||||||||| ||||   |||||||  | ||||| || ||    
T  19020158 tatccatgatagtagttagggagtgtgatgagagagggagagaactacctccatcgaaccctttagataggcaaaaactgagattgcaatgtttgaagca 19020257  T
Q  302 tgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccgat-----cagcgaaagcgactgtagt 396  Q
    |||||||||||  |  ||||||||||||||| | | ||| ||||||| ||| ||| | ||||||| ||||||||||      ||||| || |||||||||    
T  19020258 tgccactcgagggagtggtttaatcgattggaaggtgtacgattctacttattttagccatatgactttctccgatatttctagcgagagtgactgtagt 19020357  T
Q  397 gaatctgatgatagtgactgtgttttgctatattcgacttcagg 440  Q
    |||| |||||||||||||||||||||||||||||| || |||||    
T  19020358 gaatatgatgatagtgactgtgttttgctatattcaacctcagg 19020401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 205 - 431
Target Start/End: Complemental strand, 16687830 - 16687599
Alignment:
Q  205 ccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaaacatgc 304  Q
    ||||||||||  ||||| |||||||||||| ||||| | || ||   || ||||||||  |||| || ||||||||||||||| | ||||| ||||||||    
T  16687830 ccatggtagtagttagggagtgtgatgagagagggatataactagtaccttcgaatcccctagacaggcaaaggttgagattacaatgtttgaaacatgc 16687731  T
Q  305 cactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccg----atc-agcgaaagcgactgtagtgaa 399  Q
    ||  ||| |||| ||||||||||||||||| | ||| ||||||| ||||||| ||||||||| ||||||||    ||| ||||| || |||||||| |||    
T  16687730 caaacgaaaaaatggtttaatcgattgggaggtgtacgattctaattactttagtcatatgaatttctccgacttatctagcgagagtgactgtagcgaa 16687631  T
Q  400 tctgatgatagtgactgtgttttgctatattc 431  Q
    ||||||||||| |||||||||||  |||||||    
T  16687630 tctgatgatagagactgtgttttattatattc 16687599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 202 - 330
Target Start/End: Complemental strand, 22466815 - 22466687
Alignment:
Q  202 tatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaaaca 301  Q
    |||||||||||||  ||| | |||||||||||| ||||| |||| ||   || |||||||| ||||| || ||||||||||||||| | ||||| |||||    
T  22466815 tatccatggtagtagttaaggagtgtgatgagagagggatagaactagtaccttcgaatcccttagacaggcaaaggttgagattacaatgtttgaaaca 22466716  T
Q  302 tgccactcgagaaaacggtttaatcgatt 330  Q
    |||||||||| |||| |||||||||||||    
T  22466715 tgccactcgaaaaaatggtttaatcgatt 22466687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 350 - 440
Target Start/End: Complemental strand, 22466682 - 22466587
Alignment:
Q  350 ttactttggtcatatgattttctccga----tc-agcgaaagcgactgtagtgaatctgatgatagtgactgtgttttgctatattcgacttcagg 440  Q
    ||||||| ||||||||| |||||||||    || ||||| || |||||||| |||| |||||||||||||||||||||  ||||||| || |||||    
T  22466682 ttactttagtcatatgaatttctccgacatatctagcgagagtgactgtagcgaatatgatgatagtgactgtgttttattatattcaacctcagg 22466587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 199 - 440
Target Start/End: Original strand, 23523147 - 23523393
Alignment:
Q  199 gtatatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaa 298  Q
    ||||||||||||||||  ||||| | |||||||||| |||||||||| |||  || ||||||||||||||||| ||||   |||||||| | ||||| ||    
T  23523147 gtatatccatggtagtagttagggaatgtgatgagagagggagagaactacgtccttcgaatcctttagataggcaaaaactgagattacaatgtttgaa 23523246  T
Q  299 acatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccgat-----cagcgaaagcgactgt 393  Q
     |||||||||||| |||| ||||||||||||||| | | ||| ||||||||||||||| ||||||||| ||||||||||      ||||| || ||||||    
T  23523247 gcatgccactcgaaaaaatggtttaatcgattggaaggtgtacgattctagttactttagtcatatgaatttctccgatatatctagcgagagtgactgt 23523346  T
Q  394 agtgaatctgatgatagtgactgtgttttgctatattcgacttcagg 440  Q
    ||  |||||||||||||||||||||||||  ||||||| || |||||    
T  23523347 agaaaatctgatgatagtgactgtgttttattatattcaacctcagg 23523393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 40254855 - 40254938
Alignment:
Q  9 gagatgaagcaagagatcaacttcaattgttaataagaaattttcagccatctacacaagctaagacatatagtactattccac 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254855 gagatgaagcaagagatcaacttcaattgttaataagaaattttcagccatctacacaagctaagacatatagtactattccac 40254938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 199 - 440
Target Start/End: Complemental strand, 11543964 - 11543718
Alignment:
Q  199 gtatatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaa 298  Q
    ||||| ||||||||||  ||||| ||||||||||||  ||||||||| |||| || ||||| ||||||||||| ||||   |||||||| | ||||| ||    
T  11543964 gtatacccatggtagtagttagggagtgtgatgagagggggagagaactacctccttcgaaccctttagataggcaaaaactgagattacaatgtttgaa 11543865  T
Q  299 acatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccgat-----cagcgaaagcgactgt 393  Q
     |||| ||||||| |||| ||||||||||||||| ||| ||||||||||| ||| ||| ||||||||| ||||||||||      ||||| || ||||||    
T  11543864 gcatgacactcgaaaaaatggtttaatcgattggaaagtgtatgattctacttattttagtcatatgaatttctccgatatatctagcgagagtgactgt 11543765  T
Q  394 agtgaatctgatgatagtgactgtgttttgctatattcgacttcagg 440  Q
    ||  |||||||||||||||| ||||||||  ||||||| || |||||    
T  11543764 agcaaatctgatgatagtgattgtgttttattatattcaacctcagg 11543718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 376
Target Start/End: Original strand, 12530218 - 12530303
Alignment:
Q  291 tgtttaaaacatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccga 376  Q
    ||||| || ||||| |||||| |||| ||||||||||||||| ||| ||||||||| | ||| ||| ||||||||| |||||||||    
T  12530218 tgtttgaatcatgcaactcgaaaaaatggtttaatcgattggaaagtgtatgattccacttattttagtcatatgactttctccga 12530303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 385 - 527
Target Start/End: Complemental strand, 14432596 - 14432454
Alignment:
Q  385 agcgactgtagtgaatctgatgatagtgactgtgttttgctatattcgacttcagggagtcatccgggaggagacgttctcaccatttctccttctaaaa 484  Q
    ||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| | |  ||||||| ||||| ||||    
T  14432596 agcgattgtagcgaatctgacgatagtgattgtgttttgctatattcgacttcagggagtcagccgggaggagacgcttttgccatttccccttcgaaaa 14432497  T
Q  485 tggttcgtggaaaaggtagccgtattgcatgtcctgaatcgga 527  Q
    ||||||||||||||||||  ||| |||||||||||||||||||    
T  14432496 tggttcgtggaaaaggtactcgtcttgcatgtcctgaatcgga 14432454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 199 - 440
Target Start/End: Original strand, 95443 - 95689
Alignment:
Q  199 gtatatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaa 298  Q
    ||||| ||||||||||  ||||| ||||||||||||  ||||||||| |||| || ||  ||||||||||||| ||||   |||||||| | ||||| ||    
T  95443 gtatacccatggtagtagttagggagtgtgatgagagggggagagaactacctccttcagatcctttagataggcaaaaactgagattacaatgtttgaa 95542  T
Q  299 acatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccgat-----cagcgaaagcgactgt 393  Q
     |||||||||||| |||| ||||||||||||||| ||| ||||||||||| ||| ||| ||||||||| ||||||||||      ||||| || ||||||    
T  95543 gcatgccactcgaaaaaatggtttaatcgattggaaagtgtatgattctacttattttagtcatatgaatttctccgatatatctagcgagagtgactgt 95642  T
Q  394 agtgaatctgatgatagtgactgtgttttgctatattcgacttcagg 440  Q
    || ||||||||||||||||| ||||||||  ||||||| || |||||    
T  95643 agcgaatctgatgatagtgattgtgttttattatattcaacctcagg 95689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 199 - 431
Target Start/End: Original strand, 14561735 - 14561972
Alignment:
Q  199 gtatatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaa 298  Q
    ||||| ||||||||||  ||||| ||||||||||||| || |||||| || | || ||  ||||||||||||| ||||   |||||||| | ||||| ||    
T  14561735 gtatacccatggtagtagttagggagtgtgatgagaagggaagagaactatctccttcagatcctttagataggcaaaaactgagattacaatgtttgaa 14561834  T
Q  299 acatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccgat-----cagcgaaagcgactgt 393  Q
     |||||| ||||| |||| ||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||      ||||| || ||||||    
T  14561835 gcatgccgctcgaaaaaatggtttaatcgattgggaagtgtatgattctacttactttagtcatatgaatttctccgatatatctagcgagagtgactgt 14561934  T
Q  394 agtgaatctgatgatagtgactgtgttttgctatattc 431  Q
    || ||||||||||||| ||| ||||||||  |||||||    
T  14561935 agcgaatctgatgatattgattgtgttttaatatattc 14561972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 202 - 440
Target Start/End: Complemental strand, 5194810 - 5194567
Alignment:
Q  202 tatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaaaca 301  Q
    |||||||||||||  ||||| | |||||||||| ||||  || | ||   || ||||||||  |||| || ||||||||||||||| | ||||| |||||    
T  5194810 tatccatggtagttgttagggaatgtgatgagagaggggtagtactagtaccatcgaatcccatagacaggcaaaggttgagattacaatgtttgaaaca 5194711  T
Q  302 tgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccgat-----cagcgaaagcgactgtagt 396  Q
    ||| |  ||| |||||||| ||||||||||||| | ||| ||||||| ||||||| ||||||||| ||||||||||      ||||| || || | |||     
T  5194710 tgcaaaacgaaaaaacggtctaatcgattgggaggtgtacgattctacttactttagtcatatgaatttctccgatttatctagcgagagtgattttagc 5194611  T
Q  397 gaatctgatgatagtgactgtgttttgctatattcgacttcagg 440  Q
    ||||||||||||||||||||||||||  ||||||| || |||||    
T  5194610 gaatctgatgatagtgactgtgttttattatattcaacctcagg 5194567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0202 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0202
Description:

Target: scaffold0202; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 202 - 440
Target Start/End: Original strand, 11243 - 11486
Alignment:
Q  202 tatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaaaca 301  Q
    |||||||||||||  ||||| |||||||||||| |||||||||| |||| || ||||| ||||||||||| || |   |||||||  | ||||| || ||    
T  11243 tatccatggtagtagttagggagtgtgatgagagagggagagaactacctccttcgaaccctttagataggcagacactgagattgcaatgtttgaagca 11342  T
Q  302 tgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccgat-----cagcgaaagcgactgtagt 396  Q
    ||||||||| | ||| ||||||||||||||| | | ||| ||||| | ||| ||| | ||||||| ||||||||||      ||||| || || ||||||    
T  11343 tgccactcggggaaatggtttaatcgattggaaggtgtacgattccacttattttagccatatgactttctccgatatttctagcgagagtgattgtagt 11442  T
Q  397 gaatctgatgatagtgactgtgttttgctatattcgacttcagg 440  Q
    ||||||||||||||||| ||||||||||||||||| || |||||    
T  11443 gaatctgatgatagtgattgtgttttgctatattcaacctcagg 11486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 289 - 440
Target Start/End: Original strand, 547002 - 547158
Alignment:
Q  289 agtgtttaaaacatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccga----tc-agcga 383  Q
    |||||||||| ||||| |||||| |||| ||||||||||||||| ||| ||||||||| | ||| ||| |||| |||| |||||||||    || |||||    
T  547002 agtgtttaaatcatgcgactcgaaaaaatggtttaatcgattggaaagtgtatgattccacttattttagtcacatgactttctccgacatttcgagcga 547101  T
Q  384 aagcgactgtagtgaatctgatgatagtgactgtgttttgctatattcgacttcagg 440  Q
     || |||||||| || ||||| |||||||||||||||||||||||||| || |||||    
T  547102 gagtgactgtagcgattctgacgatagtgactgtgttttgctatattcaacctcagg 547158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 289 - 440
Target Start/End: Original strand, 12099518 - 12099674
Alignment:
Q  289 agtgtttaaaacatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccga----tc-agcga 383  Q
    |||||||||| ||||| |||||| |||| ||||||||||||||| ||| ||||||||| | ||| ||| |||| |||| |||||||||    || |||||    
T  12099518 agtgtttaaatcatgcgactcgaaaaaatggtttaatcgattggaaagtgtatgattccacttattttagtcacatgactttctccgacatttcgagcga 12099617  T
Q  384 aagcgactgtagtgaatctgatgatagtgactgtgttttgctatattcgacttcagg 440  Q
     || |||||||| || ||||| |||||||||||||||||||||||||| || |||||    
T  12099618 gagtgactgtagcgattctgacgatagtgactgtgttttgctatattcaacctcagg 12099674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 431
Target Start/End: Original strand, 20436107 - 20436344
Alignment:
Q  199 gtatatccatggtagtgattaggaagtgtgatgagaaagggagagaattacccccctcgaatcctttagatagacaaaggttgagattagagtgtttaaa 298  Q
    ||||| ||||||||||  ||||| ||||||||||||   ||||||||||||| || ||  |||||||||| || ||||   |  ||||| | ||||| ||    
T  20436107 gtatacccatggtagtagttagggagtgtgatgagagcaggagagaattacctccttcagatcctttagacaggcaaaaactacgattacaatgtttgaa 20436206  T
Q  299 acatgccactcgagaaaacggtttaatcgattgggaagcgtatgattctagttactttggtcatatgattttctccga----tc-agcgaaagcgactgt 393  Q
     ||||| ||| || |||| |||||||| || ||| ||| ||| ||||| | ||| ||| | ||||||| |||||||||    || ||||| |||||||||    
T  20436207 gcatgctacttgaaaaaatggtttaattgagtggaaagtgtacgattccacttattttagccatatgactttctccgacatttctagcgagagcgactgt 20436306  T
Q  394 agtgaatctgatgatagtgactgtgttttgctatattc 431  Q
    || || |||||  ||||||| ||||||||  |||||||    
T  20436307 agcgattctgacaatagtgattgtgttttattatattc 20436344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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