View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_120 (Length: 254)

Name: NF0784_low_120
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_120
NF0784_low_120
[»] chr2 (8 HSPs)
chr2 (80-216)||(1403217-1403353)
chr2 (115-216)||(1399512-1399613)
chr2 (84-188)||(410237-410341)
chr2 (108-216)||(982083-982191)
chr2 (114-206)||(974020-974112)
chr2 (84-173)||(821146-821235)
chr2 (114-205)||(965474-965565)
chr2 (142-179)||(989792-989829)
[»] chr6 (1 HSPs)
chr6 (114-216)||(10116756-10116858)
[»] chr7 (2 HSPs)
chr7 (94-173)||(1445999-1446078)
chr7 (93-158)||(12105286-12105351)
[»] chr3 (1 HSPs)
chr3 (127-216)||(45810508-45810597)


Alignment Details
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 80 - 216
Target Start/End: Complemental strand, 1403353 - 1403217
Alignment:
Q  80 agaaaagaaaagataaatcaaataagtttcttatatttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtac 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1403353 agaaaagaaaagataaatcaaataagtttcttatatttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtac 1403254  T
Q  180 aattatatcacagttatagttgagcaccagatgagtc 216  Q
    |||||||||||||||||||||||||||||||||||||    
T  1403253 aattatatcacagttatagttgagcaccagatgagtc 1403217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 1399613 - 1399512
Alignment:
Q  115 tttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatgag 214  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  1399613 tttaagacacatacctcgtaaaattcaagattttgaagcttagggcaatggtggagcacttgtacaattatatcacagctatagttgagcaccagatgag 1399514  T
Q  215 tc 216  Q
    ||    
T  1399513 tc 1399512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 84 - 188
Target Start/End: Complemental strand, 410341 - 410237
Alignment:
Q  84 aagaaaagataaatcaaataagtttcttatatttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaatt 183  Q
    |||||||||||||||||||| | |||||| |||||| | ||| |||  |||||  |||||||||||||||||||||||||||| |||||||||||||| |    
T  410341 aagaaaagataaatcaaatatgattcttaaatttaacaaacaaacccgataaagttcaagattttgaagcttagggcaatggtggagcacttgtacaact 410242  T
Q  184 atatc 188  Q
    |||||    
T  410241 atatc 410237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 216
Target Start/End: Original strand, 982083 - 982191
Alignment:
Q  108 tcttatatttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagcacc 207  Q
    |||||||||||| | ||| |||| ||||| |||||||||||||||||||  |||||||| ||||||| |||||| |||||  || | |||||||||||||    
T  982083 tcttatatttaacaaacaaacctgataaaggtcaagattttgaagcttaaagcaatggtggagcactcgtacaactatattccaatcatagttgagcacc 982182  T
Q  208 agatgagtc 216  Q
    | |||||||    
T  982183 aaatgagtc 982191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 974020 - 974112
Alignment:
Q  114 atttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagcac 206  Q
    |||||| | ||| |||| ||||| ||||||||||||||||||||||||||| | ||||||||| |||| |||||| || | ||||||||||||    
T  974020 atttaacaaacaaacctgataaaggtcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcatagttgagcac 974112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 821235 - 821146
Alignment:
Q  84 aagaaaagataaatcaaataagtttcttatatttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcac 173  Q
    |||||||||||||||||||| | |||||| | |||| |  || |||| |||||  |||||||||||||||||||||||||||| ||||||    
T  821235 aagaaaagataaatcaaataggattcttaaacttaacaagcaaacctgataaagttcaagattttgaagcttagggcaatggtggagcac 821146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 965474 - 965565
Alignment:
Q  114 atttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagca 205  Q
    |||||| | ||| |||| |||||  |||||||||||||||||||||||||| | ||||||||| |||| |||||| || | |||||||||||    
T  965474 atttaacaaacaaacctgataaagttcaagattttgaagcttagggcaatgatggagcacttgaacaactatatcccaatcatagttgagca 965565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 179
Target Start/End: Original strand, 989792 - 989829
Alignment:
Q  142 agattttgaagcttagggcaatggtagagcacttgtac 179  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  989792 agattttgaagcttagggcagtggtggagcacttgtac 989829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 10116756 - 10116858
Alignment:
Q  114 atttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatga 213  Q
    |||||| | ||| |||| |||||  |||||||||||||| ||||||||||||| |||||||||||||| |||||| || | ||||  |||||||| ||||    
T  10116756 atttaacaaacaaacctgataaagttcaagattttgaaggttagggcaatggtggagcacttgtacaactatatcccaatcatagaggagcaccaaatga 10116855  T
Q  214 gtc 216  Q
    |||    
T  10116856 gtc 10116858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 173
Target Start/End: Original strand, 1445999 - 1446078
Alignment:
Q  94 aaatcaaataagtttcttatatttaagacacatacctcataaaagtcaagattttgaagcttagggcaatggtagagcac 173  Q
    |||||||||| | || ||| | |||||| ||| |||| |||||| |||| ||||||||||||||||||| ||||||||||    
T  1445999 aaatcaaatacgattgttaaaattaagaaacaaacctgataaaattcaatattttgaagcttagggcaaaggtagagcac 1446078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 12105351 - 12105286
Alignment:
Q  93 taaatcaaataagtttcttatatttaagacacatacctcataaaagtcaagattttgaagcttagg 158  Q
    ||||||||||| | || ||| |||||||| ||| |||| | ||| |||||||||||||||||||||    
T  12105351 taaatcaaatatgattgttaaatttaagaaacaaacctgaaaaaggtcaagattttgaagcttagg 12105286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 216
Target Start/End: Original strand, 45810508 - 45810597
Alignment:
Q  127 acctcataaaagtcaagattttgaagcttagggcaatggtagagcacttgtacaattatatcacagttatagttgagcaccagatgagtc 216  Q
    |||| ||||| ||| ||| ||||||||||||| ||||| |  ||||||||||||| |||||| || | |||||||| ||||| |||||||    
T  45810508 acctgataaaggtcgagactttgaagcttaggacaatgctgaagcacttgtacaactatatcccaatcatagttgaccaccaaatgagtc 45810597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 6151 times since January 2019
Visitors: 5762