View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_122 (Length: 252)

Name: NF0784_low_122
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_122
NF0784_low_122
[»] chr1 (12 HSPs)
chr1 (1-104)||(3739808-3739911)
chr1 (1-99)||(29855071-29855169)
chr1 (1-101)||(3739827-3739927)
chr1 (1-96)||(29855060-29855155)
chr1 (5-100)||(19758268-19758364)
chr1 (5-104)||(47543616-47543715)
chr1 (5-63)||(24023959-24024017)
chr1 (5-59)||(30693352-30693406)
chr1 (1-98)||(37918914-37919011)
chr1 (2-65)||(6061493-6061556)
chr1 (13-74)||(12043638-12043698)
chr1 (12-73)||(26471099-26471160)
[»] chr2 (37 HSPs)
chr2 (1-110)||(31469084-31469193)
chr2 (1-110)||(944784-944893)
chr2 (1-101)||(31469068-31469168)
chr2 (1-104)||(10459279-10459382)
chr2 (1-109)||(10459255-10459363)
chr2 (16-106)||(41374557-41374647)
chr2 (4-97)||(38935364-38935457)
chr2 (5-100)||(41912075-41912170)
chr2 (5-101)||(16180432-16180528)
chr2 (14-73)||(19924330-19924389)
chr2 (5-104)||(43042183-43042282)
chr2 (14-92)||(7932749-7932827)
chr2 (16-65)||(43398871-43398920)
chr2 (1-100)||(16564391-16564488)
chr2 (44-108)||(33829379-33829443)
chr2 (1-100)||(24037582-24037681)
chr2 (4-93)||(11386325-11386414)
chr2 (1-81)||(7932756-7932836)
chr2 (52-104)||(17437190-17437242)
chr2 (44-104)||(29291120-29291180)
chr2 (40-100)||(41099030-41099090)
chr2 (14-73)||(10069243-10069302)
chr2 (14-73)||(13724138-13724197)
chr2 (27-73)||(14740502-14740548)
chr2 (4-58)||(17437166-17437220)
chr2 (4-62)||(35693934-35693992)
chr2 (52-110)||(38935427-38935485)
chr2 (14-107)||(35311176-35311268)
chr2 (1-109)||(35311198-35311306)
chr2 (14-67)||(40713868-40713921)
chr2 (5-86)||(41374541-41374622)
chr2 (44-100)||(2884254-2884310)
chr2 (4-96)||(4445866-4445958)
chr2 (44-96)||(16180491-16180543)
chr2 (14-42)||(27280020-27280048)
chr2 (14-73)||(41492932-41492991)
chr2 (21-97)||(43398871-43398947)
[»] chr5 (31 HSPs)
chr5 (1-104)||(39030576-39030679)
chr5 (1-101)||(39030560-39030660)
chr5 (1-96)||(33669929-33670024)
chr5 (1-109)||(33669940-33670048)
chr5 (1-104)||(34252730-34252833)
chr5 (44-109)||(34252706-34252771)
chr5 (4-104)||(2424432-2424532)
chr5 (5-64)||(38958078-38958137)
chr5 (19-98)||(17555944-17556023)
chr5 (5-59)||(42324919-42324973)
chr5 (8-112)||(19644385-19644488)
chr5 (4-88)||(26835240-26835324)
chr5 (13-65)||(28023956-28024008)
chr5 (5-93)||(30293393-30293481)
chr5 (22-102)||(38958057-38958137)
chr5 (5-92)||(2884046-2884132)
chr5 (5-104)||(9956515-9956614)
chr5 (1-92)||(14646368-14646459)
chr5 (3-54)||(42708597-42708648)
chr5 (6-40)||(11507888-11507922)
chr5 (6-40)||(11515259-11515293)
chr5 (6-40)||(11522661-11522695)
chr5 (6-40)||(11530073-11530107)
chr5 (5-55)||(26730097-26730147)
chr5 (1-55)||(26746239-26746292)
chr5 (49-99)||(29960471-29960521)
chr5 (52-109)||(42708571-42708628)
chr5 (16-76)||(3549585-3549645)
chr5 (6-62)||(6021979-6022035)
chr5 (5-45)||(12002769-12002809)
chr5 (13-73)||(39290809-39290869)
[»] chr7 (18 HSPs)
chr7 (1-111)||(16866388-16866498)
chr7 (1-101)||(3719874-3719974)
chr7 (1-87)||(16866414-16866500)
chr7 (40-104)||(27147591-27147655)
chr7 (4-59)||(44816483-44816538)
chr7 (5-98)||(18731990-18732083)
chr7 (1-57)||(6803320-6803376)
chr7 (1-81)||(18732003-18732083)
chr7 (19-98)||(14773502-14773581)
chr7 (19-98)||(15223954-15224033)
chr7 (5-81)||(3769770-3769846)
chr7 (1-80)||(4259324-4259403)
chr7 (1-65)||(5026153-5026217)
chr7 (5-96)||(23971186-23971278)
chr7 (52-97)||(6803308-6803353)
chr7 (12-73)||(28536785-28536846)
chr7 (14-73)||(94354-94413)
chr7 (21-97)||(5026141-5026217)
[»] chr4 (20 HSPs)
chr4 (105-176)||(12715335-12715406)
chr4 (4-86)||(54235234-54235316)
chr4 (49-100)||(2734177-2734228)
chr4 (1-57)||(55827282-55827338)
chr4 (40-98)||(55827293-55827351)
chr4 (9-94)||(12276841-12276926)
chr4 (5-86)||(24980642-24980723)
chr4 (4-57)||(55762905-55762958)
chr4 (51-104)||(55762927-55762980)
chr4 (6-102)||(4423167-4423263)
chr4 (5-65)||(4479609-4479669)
chr4 (1-109)||(12276809-12276917)
chr4 (44-100)||(48514591-48514647)
chr4 (5-96)||(2871515-2871606)
chr4 (14-73)||(24704405-24704464)
chr4 (5-59)||(3249702-3249756)
chr4 (1-50)||(30848640-30848689)
chr4 (12-73)||(41615710-41615771)
chr4 (27-87)||(3249696-3249756)
chr4 (21-73)||(41594689-41594741)
[»] chr6 (16 HSPs)
chr6 (1-104)||(31323827-31323930)
chr6 (5-102)||(2282415-2282512)
chr6 (1-104)||(30531191-30531294)
chr6 (1-104)||(31323808-31323911)
chr6 (14-104)||(28004617-28004707)
chr6 (1-104)||(14446709-14446812)
chr6 (15-96)||(28004650-28004731)
chr6 (5-64)||(8215222-8215281)
chr6 (5-65)||(33822305-33822365)
chr6 (49-92)||(28756663-28756706)
chr6 (5-59)||(9829908-9829962)
chr6 (14-59)||(8437813-8437858)
chr6 (27-112)||(13320849-13320934)
chr6 (6-59)||(31522647-31522700)
chr6 (40-104)||(9675756-9675820)
chr6 (1-65)||(9675775-9675839)
[»] chr3 (16 HSPs)
chr3 (1-100)||(32221468-32221567)
chr3 (1-104)||(32221483-32221586)
chr3 (1-110)||(26914438-26914546)
chr3 (5-62)||(31280172-31280229)
chr3 (5-102)||(47783095-47783192)
chr3 (1-100)||(46829047-46829139)
chr3 (1-104)||(46829062-46829158)
chr3 (1-59)||(40905815-40905873)
chr3 (5-92)||(31280161-31280248)
chr3 (14-73)||(33942968-33943027)
chr3 (27-86)||(40905814-40905873)
chr3 (14-73)||(42170382-42170441)
chr3 (16-86)||(46733045-46733115)
chr3 (6-59)||(22756913-22756966)
chr3 (12-73)||(36095714-36095775)
chr3 (5-65)||(40955795-40955855)
[»] chr8 (12 HSPs)
chr8 (1-65)||(13209977-13210041)
chr8 (1-94)||(35901039-35901132)
chr8 (5-101)||(11114253-11114349)
chr8 (4-65)||(8777785-8777846)
chr8 (5-86)||(33557787-33557868)
chr8 (4-60)||(29110997-29111053)
chr8 (4-81)||(9548066-9548143)
chr8 (14-85)||(13209977-13210048)
chr8 (14-73)||(25601036-25601095)
chr8 (26-109)||(29110997-29111080)
chr8 (7-100)||(29797938-29798034)
chr8 (1-97)||(33557788-33557884)
[»] scaffold2113 (2 HSPs)
scaffold2113 (14-104)||(571-660)
scaffold2113 (16-96)||(604-684)
[»] scaffold0027 (1 HSPs)
scaffold0027 (1-65)||(13187-13251)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-81)||(94959-95039)
[»] scaffold0126 (1 HSPs)
scaffold0126 (5-55)||(28184-28234)
[»] scaffold0097 (2 HSPs)
scaffold0097 (5-59)||(37928-37982)
scaffold0097 (49-81)||(37928-37960)
[»] scaffold0067 (1 HSPs)
scaffold0067 (5-97)||(35957-36049)
[»] scaffold0650 (1 HSPs)
scaffold0650 (14-73)||(21-80)
[»] scaffold0003 (1 HSPs)
scaffold0003 (10-73)||(312753-312816)


Alignment Details
Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3739911 - 3739808
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  3739911 aagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 3739812  T
Q  101 ggga 104  Q
    ||||    
T  3739811 ggga 3739808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 29855071 - 29855169
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgg 99  Q
    |||| |||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| |||||  ||||||||||||| |||| ||||||    
T  29855071 aagcgaaaattaatcaacaaaagttgatgtatttggttaaaaatttgtacgaaatacattaacttttgttgatcaatttttgcttatattttaggacgg 29855169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 3739827 - 3739927
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||| ||||| ||||||||||||| ||||  ||| |||  |||||||||||||||||| |||||| ||||||||||||| |||| |||||||    
T  3739827 aagcaaaaattggtcaacgaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattttaggacgga 3739926  T
Q  101 g 101  Q
    |    
T  3739927 g 3739927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 29855155 - 29855060
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttggga 96  Q
    |||||||||||||||||||||||||||||||| | ||  ||| |||  ||||||||||| |||||| ||||| ||||||| |||||| ||||||||    
T  29855155 aagcaaaaattgatcaacaaaagttaatgtatttcgtacaaatttttaaccaaatacatcaacttttgttgattaattttcgcttatattttggga 29855060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 19758364 - 19758268
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgtt-gactaatttttgcttattttttgggacgga 100  Q
    |||||||| ||||||||||||||||||| | ||| | |||||||||||||||||| ||||| ||||  ||| |||||||||||  ||||||||||||    
T  19758364 aaaaattggtcaacaaaagttaatgtatttagtttataatttgtaccaaatacatcaacttacgttatactcatttttgcttacattttgggacgga 19758268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 47543616 - 47543715
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggaggga 104  Q
    |||||||| ||||||||| |||||| || ||||| |||||||||||||||||||| ||||| || |   | ||||| |||||  ||||||||||||||||    
T  47543616 aaaaattggtcaacaaaaattaatgaatttggttcaaaatttgtaccaaatacatcaacttacgctatttcattttggcttacattttgggacggaggga 47543715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 24024017 - 24023959
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaac 63  Q
    |||||||||||||||||||||||||||| ||||| |||||||| | || ||||||||||    
T  24024017 aaaaattgatcaacaaaagttaatgtatgtggttcaaaatttgcatcagatacattaac 24023959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 30693352 - 30693406
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacat 59  Q
    |||||||||||||||||| ||||||||| || || ||||||||||||||||||||    
T  30693352 aaaaattgatcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacat 30693406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 37919011 - 37918914
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacg 98  Q
    |||| ||||||  ||||||||||| ||||||| ||||| ||||||| || ||||||||| |||||  ||||| | |||||||||||  ||||||||||    
T  37919011 aagcgaaaatttgtcaacaaaagtgaatgtatttggtttaaaatttatatcaaatacatcaacttatgttgattcatttttgcttacattttgggacg 37918914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 6061556 - 6061493
Alignment:
Q  2 agcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactt 65  Q
    |||||| |||| ||||||||| ||||||||| || || ||||||||||| | ||||||||||||    
T  6061556 agcaaatattggtcaacaaaaattaatgtatttgttttaaaatttgtactagatacattaactt 6061493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 12043698 - 12043638
Alignment:
Q  13 atcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgact 74  Q
    |||||||||| ||||||||||| |||||||| ||| | ||||||||| |||||| |||||||    
T  12043698 atcaacaaaaattaatgtatcttgttaaaaa-ttgaatcaaatacatcaacttttgttgact 12043638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 26471099 - 26471160
Alignment:
Q  12 gatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    |||||||||||||| |||||||| ||||||||||    ||||||||||| ||||| ||||||    
T  26471099 gatcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgac 26471160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 31469084 - 31469193
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  31469084 aagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtatcaaatacattaactttcgttgaccaatttttgcttatattttgggacgga 31469183  T
Q  101 gggaatatta 110  Q
     |||||||||    
T  31469184 tggaatatta 31469193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 944784 - 944893
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||| |||||| |||||||||||||| | ||| |||||||||||||||||||| |||||  |||||||||||||| ||||  ||||| ||||||    
T  944784 aagcaaaaatcgatcaataaaagttaatgtatttagttcaaaatttgtaccaaatacatcaacttatgttgactaatttttacttacattttgagacgga 944883  T
Q  101 gggaatatta 110  Q
    |||| |||||    
T  944884 gggagtatta 944893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 31469168 - 31469068
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||| ||||| ||||||||||||| || |  ||| |||  |||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  31469168 aagcaaaaattggtcaacgaaagttaatgtatttgatacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattttgggacgga 31469069  T
Q  101 g 101  Q
    |    
T  31469068 g 31469068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 10459279 - 10459382
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||| ||||||||||||||||||| ||||| |||||||||| || || ||| |||||  |||||| ||| ||||||||  ||||||||||||    
T  10459279 aagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttgtatcagatgcatcaacttatgttgaccaatctttgcttacattttgggacgga 10459378  T
Q  101 ggga 104  Q
    ||||    
T  10459379 ggga 10459382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 10459363 - 10459255
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    ||||||| |||| |||||| ||||| ||| ||||| |  ||| |||| |||||||||||||||||| |||||| ||||||||||||| |||||||| |||    
T  10459363 aagcaaagattggtcaacataagttgatgcatctgatacaaattttgaaccaaatacattaacttttgttgaccaatttttgcttatattttgggaagga 10459264  T
Q  101 gggaatatt 109  Q
    |||| ||||    
T  10459263 gggagtatt 10459255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 41374557 - 41374647
Alignment:
Q  16 aacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggagggaat 106  Q
    |||| ||||| |||||| ||||  ||| |||| | ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||    
T  41374557 aacacaagttgatgtatttggtataaactttgaatcaaatacattaactttcgttgactaatttttacttatattttgagacggagggaat 41374647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 38935457 - 38935364
Alignment:
Q  4 caaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggac 97  Q
    ||||||||  ||||||||||||||||||| | ||| ||||| |||| ||||||||| |||||  ||||||| |||||||||||| |||||||||    
T  38935457 caaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacatcaacttatgttgactcatttttgcttatattttgggac 38935364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 100
Target Start/End: Complemental strand, 41912170 - 41912075
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||| ||||||||| ||||||||||||||| |||||||||||||  || ||||||||  ||||||| |||||| ||| | |||| |||||||    
T  41912170 aaaaattgttcaacaaaaattaatgtatctggttcaaaatttgtaccagctagattaacttatgttgacttatttttacttgtattttaggacgga 41912075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 101
Target Start/End: Complemental strand, 16180528 - 16180432
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggag 101  Q
    |||| ||| ||||||||||||||||||| ||||| ||||||| ||   ||||||| || ||  |||||||||||||||||||  |||||||||||||    
T  16180528 aaaatttggtcaacaaaagttaatgtatttggttcaaaatttatatttaatacatcaatttatgttgactaatttttgcttacattttgggacggag 16180432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 19924330 - 19924389
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    |||| |||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||    
T  19924330 tcaataaaagttaatgtatatggttcaaaatttgtaccaaatacatcaacttacgttgac 19924389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 43042183 - 43042282
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggaggga 104  Q
    |||||| ||||||||||| |||||||||  |||| ||||||| || || |||||| |||||| ||| ||| |||||||||||  |||||||| |||||||    
T  43042183 aaaaatcgatcaacaaaatttaatgtattcggttcaaaatttatatcagatacatcaacttttgtttactcatttttgcttacattttgggatggaggga 43042282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 7932827 - 7932749
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttatttttt 92  Q
    |||||| ||||| ||||||||| |  ||| |||| ||||||||| |||||||| |||||||||||||||||||| ||||    
T  7932827 tcaacataagttgatgtatctgatataaattttgaaccaaatacgttaacttttgttgactaatttttgcttatatttt 7932749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 43398920 - 43398871
Alignment:
Q  16 aacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactt 65  Q
    ||||||||||||||||| ||||| |||||||||||||||||||| |||||    
T  43398920 aacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaactt 43398871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 16564391 - 16564488
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||| || ||||| |||| ||| |  |||| |||||||||||||||||||| |||||  ||||||| |||||| ||||  ||||||||||||    
T  16564391 aagcaaaaattggtctacaaacgttagtgttt--ggttcaaaatttgtaccaaatacatcaacttatgttgactcatttttacttacattttgggacgga 16564488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 108
Target Start/End: Complemental strand, 33829443 - 33829379
Alignment:
Q  44 tttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggagggaatat 108  Q
    ||||||||||||| ||||| ||| |||||| |||||||| |||| |||||||||| |||||||||    
T  33829443 tttgtaccaaatatattaatttttgttgaccaatttttgtttatattttgggacgtagggaatat 33829379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 24037681 - 24037582
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||| | || ||| ||||| |||||| | ||| ||||||||||||||||| || |||||  ||||||| |||||||||||  |||| |||||||    
T  24037681 aagcaaaaatgggtcgacataagttgatgtattttgttcaaaatttgtaccaaatatatcaacttatgttgactcatttttgcttacattttaggacgga 24037582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 11386325 - 11386414
Alignment:
Q  4 caaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttg 93  Q
    ||||||||||||||||||| ||||| ||| |  || |||||||||| ||||||||| |||||  |||||  || |||||||||| |||||    
T  11386325 caaaaattgatcaacaaaaattaatatatttaattcaaaatttgtatcaaatacatcaacttatgttgatcaaattttgcttatattttg 11386414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 7932756 - 7932836
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaattttt 81  Q
    |||||||||||  |||||||||||||| |||| ||||| ||||||| || || |||||| |||||  ||||||| ||||||    
T  7932756 aagcaaaaattagtcaacaaaagttaacgtatttggttcaaaatttatatcagatacatcaacttatgttgactcattttt 7932836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 104
Target Start/End: Original strand, 17437190 - 17437242
Alignment:
Q  52 aaatacattaactttcgttgactaatttttgcttattttttgggacggaggga 104  Q
    ||||||||||| ||| |||||| |||||||| |||| ||||||||||||||||    
T  17437190 aaatacattaatttttgttgacaaatttttgtttatattttgggacggaggga 17437242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 29291120 - 29291180
Alignment:
Q  44 tttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggaggga 104  Q
    |||| |||||||| |||||||||  ||||| ||||||||||||  ||||||||||||||||    
T  29291120 tttgaaccaaatatattaacttttattgaccaatttttgcttacattttgggacggaggga 29291180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 41099030 - 41099090
Alignment:
Q  40 aaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    ||||||||||||||||||||||||||  ||||||  |||||||||||  |||||| |||||    
T  41099030 aaaatttgtaccaaatacattaacttatgttgacccatttttgcttacattttggaacgga 41099090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 10069243 - 10069302
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    |||| ||||||| ||||||||||||||||| ||| || | ||||||||||||| ||||||    
T  10069243 tcaataaaagtttatgtatctggttaaaaaattggactagatacattaacttttgttgac 10069302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 13724138 - 13724197
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    |||||||||||| |||||| |||||||||| ||| |||| |||||| |||||| ||||||    
T  13724138 tcaacaaaagttgatgtatttggttaaaaaattggaccagatacatcaacttttgttgac 13724197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 14740548 - 14740502
Alignment:
Q  27 atgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    ||||||||||||||||||||| || |||||||||| |||| ||||||    
T  14740548 atgtatctggttaaaaatttggacgaaatacattaccttttgttgac 14740502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 17437220 - 17437166
Alignment:
Q  4 caaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaataca 58  Q
    ||||||||  ||||||||| ||||||||| | ||| |||||||||||||||||||    
T  17437220 caaaaatttgtcaacaaaaattaatgtatttagttcaaaatttgtaccaaataca 17437166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 35693934 - 35693992
Alignment:
Q  4 caaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaa 62  Q
    ||||||||| |||| |||| ||||||||| ||||| |||||| ||| ||||||||||||    
T  35693934 caaaaattggtcaataaaaattaatgtatttggtttaaaattagtatcaaatacattaa 35693992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 38935427 - 38935485
Alignment:
Q  52 aaatacattaactttcgttgactaatttttgcttattttttgggacggagggaatatta 110  Q
    ||||||||||||||| ||||| ||||||||| |||| |||| ||||||| ||| |||||    
T  38935427 aaatacattaacttttgttgagtaatttttgtttatatttttggacggatggagtatta 38935485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 35311268 - 35311176
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggagggaata 107  Q
    ||||||||||||||||||| ||||| ||||||||||| | ||| | ||||||  ||||||  |||||||||||  |||||  ||| ||||||||    
T  35311268 tcaacaaaagttaatgtatttggttcaaaatttgtacaagatata-taacttatgttgacccatttttgcttacattttgaaacgaagggaata 35311176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 35311198 - 35311306
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgact-aatttttgcttattttttgggacgg 99  Q
    |||||||||| | |||||| |||||| | ||||| ||  ||| |||| |||||||||||||||||| ||||||| ||||||| ||||  ||||| || ||    
T  35311198 aagcaaaaatgggtcaacataagtta-tatatcttgtacaaattttgaaccaaatacattaacttttgttgactaaattttttcttacattttgtgaagg 35311296  T
Q  100 agggaatatt 109  Q
    ||||| ||||    
T  35311297 agggagtatt 35311306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 40713921 - 40713868
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttc 67  Q
    |||||||||||| ||||||| |||| |||||||| |||| |||||| |||||||    
T  40713921 tcaacaaaagttgatgtatcaggttcaaaatttggaccagatacatcaactttc 40713868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 41374622 - 41374541
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgctta 86  Q
    |||||||  ||||| ||||||||||||| || || ||| ||| |||||||||||| |||||  ||| ||| |||||||||||    
T  41374622 aaaaattagtcaacgaaagttaatgtatttgattcaaagtttataccaaatacatcaacttgtgttcactcatttttgctta 41374541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 100
Target Start/End: Complemental strand, 2884310 - 2884254
Alignment:
Q  44 tttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||| |||||||||||||| ||| |||||| ||||||| ||||| |||| |||||||    
T  2884310 tttgaaccaaatacattaatttttgttgacaaatttttacttatattttaggacgga 2884254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 4445958 - 4445866
Alignment:
Q  4 caaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttggga 96  Q
    |||||||| |||| ||||||| |||  || | ||| |||||||||||||||||||| || ||   || ||| |||||||||||| ||||||||    
T  4445958 caaaaattaatcagcaaaagtcaatacattttgttcaaaatttgtaccaaatacatcaatttatattaacttatttttgcttatattttggga 4445866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 16180491 - 16180543
Alignment:
Q  44 tttgtaccaaatacattaactttcgttgactaatttttgcttattttttggga 96  Q
    |||| |||||||||||||||||| |||||| || |||| ||||| ||||||||    
T  16180491 tttgaaccaaatacattaacttttgttgaccaaattttacttatattttggga 16180543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 42
Target Start/End: Complemental strand, 27280048 - 27280020
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaa 42  Q
    |||||||||||||||||||||||||||||    
T  27280048 tcaacaaaagttaatgtatctggttaaaa 27280020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 41492932 - 41492991
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatt-tgtaccaaatacattaactttcgttgac 73  Q
    |||||||||||| |||||||| |||||||||| ||| ||||||||||| ||||| ||||||    
T  41492932 tcaacaaaagttgatgtatctagttaaaaattctgt-ccaaatacattcacttttgttgac 41492991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Original strand, 43398871 - 43398947
Alignment:
Q  21 aagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggac 97  Q
    ||||| |||||| ||||  ||| |||| |||||||||||||||||| ||| || |||||||| |||  |||||||||    
T  43398871 aagttgatgtatttggtacaaattttgaaccaaatacattaacttttgttaacaaatttttgtttagattttgggac 43398947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 39030576 - 39030679
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||    
T  39030576 aagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtaccaaatacattaacttttgttgactaatttttgcttatattttgggatgga 39030675  T
Q  101 ggga 104  Q
    ||||    
T  39030676 ggga 39030679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 39030660 - 39030560
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||  ||||||||||||||||||| ||||  ||| |||  |||||||||||||||||| |||||| ||||||||||||| |||| | |||||    
T  39030660 aagcaaaaattagtcaacaaaagttaatgtatttggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttatattttagaacgga 39030561  T
Q  101 g 101  Q
    |    
T  39030560 g 39030560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 33670024 - 33669929
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttggga 96  Q
    |||||||||||| |||| |||||||||||||| ||||| ||||||||||||| ||||| ||||||  ||||||  |||||||||||  ||||||||    
T  33670024 aagcaaaaattggtcaaaaaaagttaatgtatttggtttaaaatttgtaccagatacactaacttatgttgacccatttttgcttacattttggga 33669929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 33669940 - 33670048
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||| | |||||| |||||| ||||||||||  ||| |||  ||||||||||||||||||  ||||| ||||||||||||  ||||||||||||    
T  33669940 aagcaaaaatgggtcaacataagttagtgtatctggtacaaattttaaaccaaatacattaactttttttgaccaatttttgcttacattttgggacgga 33670039  T
Q  101 gggaatatt 109  Q
     ||| ||||    
T  33670040 tggagtatt 33670048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 34252730 - 34252833
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||| ||||||||||||||||||| ||||| ||||||| | ||| || ||| |||||  ||| ||  |||||||||||  ||||||||||||    
T  34252730 aagcaaaaattggtcaacaaaagttaatgtatttggttcaaaatttatgccacattcatcaacttatgttaacccatttttgcttacattttgggacgga 34252829  T
Q  101 ggga 104  Q
    ||||    
T  34252830 ggga 34252833  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 34252771 - 34252706
Alignment:
Q  44 tttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggagggaatatt 109  Q
    |||| |||||||||||||||||| |||||| ||||||||||||  |||||||||||||||| ||||    
T  34252771 tttgaaccaaatacattaacttttgttgaccaatttttgcttacattttgggacggagggagtatt 34252706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 2424532 - 2424432
Alignment:
Q  4 caaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggaggg 103  Q
    ||||||||| || | |||||||||||||| ||||| ||||||||||||| |||||| | |||  ||| || ||||||||||||| |||| | ||||||||    
T  2424532 caaaaattggtcgataaaagttaatgtatttggttcaaaatttgtaccatatacatcagcttatgttaacaaatttttgcttatattttagcacggaggg 2424433  T
Q  104 a 104  Q
    |    
T  2424432 a 2424432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 38958078 - 38958137
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaact 64  Q
    |||||||||| ||||||||||||||||| ||||| ||| |||||||||||||||| ||||    
T  38958078 aaaaattgattaacaaaagttaatgtatttggttcaaattttgtaccaaatacatcaact 38958137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 17556023 - 17555944
Alignment:
Q  19 aaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacg 98  Q
    |||||||||||||| ||||| ||||||| || |||||| || ||||| |||||||| |||||| ||||| ||||| ||||    
T  17556023 aaaagttaatgtatgtggttcaaaatttatatcaaatatatcaacttacgttgactcatttttacttatattttgagacg 17555944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 42324973 - 42324919
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacat 59  Q
    |||||||| ||||||||||||||||||| || || ||||||| ||||||||||||    
T  42324973 aaaaattggtcaacaaaagttaatgtatttgttttaaaatttataccaaatacat 42324919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 19644488 - 19644385
Alignment:
Q  8 aattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggagggaata 107  Q
    ||||||||||||||| |||| |||| ||||| ||||||| ||| |||||||| |||||  | | | | ||||||| |||| |||| ||||||||| ||||    
T  19644488 aattgatcaacaaaaattaacgtatttggttcaaaatttatactaaatacatcaacttatg-taaattatttttgtttatattttaggacggaggtaata 19644390  T
Q  108 ttaat 112  Q
    |||||    
T  19644389 ttaat 19644385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 26835324 - 26835240
Alignment:
Q  4 caaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttatt 88  Q
    |||||| || ||||||||||||||| ||| |||||||||||||||| |||||  || | ||| | ||| | ||||||||||||||    
T  26835324 caaaaagtggtcaacaaaagttaatatatttggttaaaaatttgtatcaaatctatcaccttacattgtcgaatttttgcttatt 26835240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 65
Target Start/End: Complemental strand, 28024008 - 28023956
Alignment:
Q  13 atcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactt 65  Q
    ||||| |||||||||||||| || || ||||||||||| ||||||||||||||    
T  28024008 atcaataaaagttaatgtatttgattcaaaatttgtacaaaatacattaactt 28023956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 30293393 - 30293481
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttg 93  Q
    |||| ||||||||||||||| ||||||| || || ||||||| || ||||||||| ||| |  ||||||| |||||| ||||| |||||    
T  30293393 aaaatttgatcaacaaaagtcaatgtatttgattcaaaatttatatcaaatacatcaacatatgttgactcatttttacttatattttg 30293481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 38958137 - 38958057
Alignment:
Q  22 agttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggagg 102  Q
    |||| |||||| ||||  |||||||| |||||||||||||||||| ||| |  ||||||| ||||| |||||| |||||||    
T  38958137 agttgatgtatttggtacaaaatttgaaccaaatacattaacttttgttaatcaatttttacttatattttggaacggagg 38958057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Original strand, 2884046 - 2884132
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttatttttt 92  Q
    ||||||||||||| |||| ||||||||| || || ||||||||||  ||||||||||| |||  ||||| ||||||| ||||| ||||    
T  2884046 aaaaattgatcaataaaa-ttaatgtatttgatttaaaatttgtattaaatacattaaattttattgaccaatttttacttatatttt 2884132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 9956515 - 9956614
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggaggga 104  Q
    |||||| | |||||| | ||| ||||||||| |  ||| |||| | |||||||||||||||| ||| || ||||||| ||||  ||||||||||||||||    
T  9956515 aaaaatgggtcaacatatgttgatgtatctgttataaattttgaatcaaatacattaacttttgttaaccaatttttacttacattttgggacggaggga 9956614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 14646459 - 14646368
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttatttttt 92  Q
    |||| ||||||||| || |||| ||||||||| || || ||||||||||| ||||||||||| ||   |||||| |||||| ||||| ||||    
T  14646459 aagcgaaaattgataaataaaaattaatgtatatgattcaaaatttgtactaaatacattaatttatattgacttatttttacttatatttt 14646368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 42708597 - 42708648
Alignment:
Q  3 gcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaa 54  Q
    ||||||||| |||||||||||||||||||| | ||| ||||||| |||||||    
T  42708597 gcaaaaattaatcaacaaaagttaatgtatttagttgaaaatttataccaaa 42708648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 11507888 - 11507922
Alignment:
Q  6 aaaattgatcaacaaaagttaatgtatctggttaa 40  Q
    ||||||| |||||||||||||||||||||||||||    
T  11507888 aaaattggtcaacaaaagttaatgtatctggttaa 11507922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 11515259 - 11515293
Alignment:
Q  6 aaaattgatcaacaaaagttaatgtatctggttaa 40  Q
    ||||||| |||||||||||||||||||||||||||    
T  11515259 aaaattggtcaacaaaagttaatgtatctggttaa 11515293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 11522661 - 11522695
Alignment:
Q  6 aaaattgatcaacaaaagttaatgtatctggttaa 40  Q
    ||||||| |||||||||||||||||||||||||||    
T  11522661 aaaattggtcaacaaaagttaatgtatctggttaa 11522695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 11530073 - 11530107
Alignment:
Q  6 aaaattgatcaacaaaagttaatgtatctggttaa 40  Q
    ||||||| |||||||||||||||||||||||||||    
T  11530073 aaaattggtcaacaaaagttaatgtatctggttaa 11530107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 26730147 - 26730097
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaat 55  Q
    |||||||| | ||||||||||||||||| || ||||||||||||| |||||    
T  26730147 aaaaattggttaacaaaagttaatgtatttgattaaaaatttgtatcaaat 26730097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26746292 - 26746239
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaat 55  Q
    |||||||||||||||||| ||||||||| ||| | |||||||||||||| |||||    
T  26746292 aagcaaaaattgatcaac-aaagttaatttatttagttaaaaatttgtatcaaat 26746239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 29960471 - 29960521
Alignment:
Q  49 accaaatacattaactttcgttgactaatttttgcttattttttgggacgg 99  Q
    |||||||||||||||||| |||| |||||||||| |||  |||||||||||    
T  29960471 accaaatacattaacttttgttgtctaatttttgtttacattttgggacgg 29960521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 42708628 - 42708571
Alignment:
Q  52 aaatacattaactttcgttgactaatttttgcttattttttgggacggagggaatatt 109  Q
    ||||||||||||||| ||||| |||||||||| ||| |||| ||||||| | ||||||    
T  42708628 aaatacattaacttttgttgattaatttttgcgtatattttaggacggaagaaatatt 42708571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 3549585 - 3549645
Alignment:
Q  16 aacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaa 76  Q
    |||||||||| ||||||  ||||||||||||  |||| ||||||||| ||| |||||||||    
T  3549585 aacaaaagttgatgtattcggttaaaaatttagaccagatacattaatttttgttgactaa 3549645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 6022035 - 6021979
Alignment:
Q  6 aaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaa 62  Q
    ||||||||||| ||||||||||||||| |  || ||||||| || ||||||||||||    
T  6022035 aaaattgatcagcaaaagttaatgtatttaatttaaaatttatatcaaatacattaa 6021979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 12002769 - 12002809
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatt 45  Q
    ||||||||||||| |||||||||||||| ||||| ||||||    
T  12002769 aaaaattgatcaataaaagttaatgtatatggtttaaaatt 12002809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 39290869 - 39290809
Alignment:
Q  13 atcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    ||||||||||||||||||||||  ||||||||||   |||||||||| || ||| ||||||    
T  39290869 atcaacaaaagttaatgtatctaattaaaaatttaatccaaatacatcaatttttgttgac 39290809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 16866498 - 16866388
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||  ||||  ||||||||||||| |||||||| |||    
T  16866498 aagcaaaaattggtcaacaaaagttaatgtatttggttaaaaatttgtacctaatacattaacttttattgatcaatttttgcttatattttgggatgga 16866399  T
Q  101 gggaatattaa 111  Q
    |||| ||||||    
T  16866398 gggagtattaa 16866388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 3719974 - 3719874
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    ||||||||||||||||||| ||||| |||||||| || ||||||||| |||||||||| ||||||| |||||| ||||||| | ||| |||||||| |||    
T  3719974 aagcaaaaattgatcaacataagttgatgtatctcgtaaaaaatttgaaccaaatacactaactttagttgaccaatttttacatatattttgggatgga 3719875  T
Q  101 g 101  Q
    |    
T  3719874 g 3719874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 16866414 - 16866500
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttat 87  Q
    ||||||||||||||||| ||||||||||||||  |||  ||| |||  |||||||||||||||||| |||||| |||||||||||||    
T  16866414 aagcaaaaattgatcaataaaagttaatgtattaggtacaaatttttaaccaaatacattaacttttgttgaccaatttttgcttat 16866500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 27147655 - 27147591
Alignment:
Q  40 aaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggaggga 104  Q
    |||||||||| |||||||||||||||| |||||||||||||| ||||| |||| | |||||||||    
T  27147655 aaaatttgtatcaaatacattaacttttgttgactaatttttacttatattttagaacggaggga 27147591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 44816483 - 44816538
Alignment:
Q  4 caaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacat 59  Q
    |||||||||  |||||||||||||||||| ||||| ||||||||||||||||||||    
T  44816483 caaaaattggccaacaaaagttaatgtatttggttcaaaatttgtaccaaatacat 44816538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 98
Target Start/End: Complemental strand, 18732083 - 18731990
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacg 98  Q
    |||||||| |||| |||||||||||||| ||||| ||||||| ||||| |||||| || ||  |||||   |||||||||||| ||||||||||    
T  18732083 aaaaattggtcaataaaagttaatgtatttggttcaaaatttataccagatacatcaatttatgttgatccatttttgcttatattttgggacg 18731990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 6803320 - 6803376
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatac 57  Q
    |||||||| ||| ||||||||||||||||||| | ||| ||||||||||||||||||    
T  6803320 aagcaaaatttggtcaacaaaagttaatgtatttagtttaaaatttgtaccaaatac 6803376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 18732003 - 18732083
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaattttt 81  Q
    |||||||||| |||||||| || || |||||||||||  ||| |||| ||||||||||||||||||  ||||| |||||||    
T  18732003 aagcaaaaatggatcaacataaattgatgtatctggtataaattttgaaccaaatacattaacttttattgaccaattttt 18732083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 14773502 - 14773581
Alignment:
Q  19 aaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacg 98  Q
    |||||||||||||| ||||| ||||||| || || |||||| ||||| |||||||| |||||| ||||| ||||| ||||    
T  14773502 aaaagttaatgtatgtggttcaaaatttatatcagatacatcaacttacgttgactcatttttacttatattttgagacg 14773581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 15223954 - 15224033
Alignment:
Q  19 aaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacg 98  Q
    |||||||||||||| ||||| ||||||| || || |||||| ||||| |||||||| |||||| ||||| ||||| ||||    
T  15223954 aaaagttaatgtatgtggttcaaaatttatatcagatacatcaacttacgttgactcatttttacttatattttgagacg 15224033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 3769846 - 3769770
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaattttt 81  Q
    ||||||||||  |||||||||||||||| | ||| ||||||||||  |||||||| |||||  ||||||| ||||||    
T  3769846 aaaaattgatatacaaaagttaatgtatttagtttaaaatttgtattaaatacatcaacttgtgttgactcattttt 3769770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 4259403 - 4259324
Alignment:
Q  1 aagcaaaaattgatc-aacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttt 80  Q
    ||||||||||||||| ||||||||||||||||| || || ||||||| ||  ||||||||||||||  ||||||| |||||    
T  4259403 aagcaaaaattgatctaacaaaagttaatgtatttg-ttcaaaatttatagtaaatacattaacttatgttgactcatttt 4259324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 5026153 - 5026217
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactt 65  Q
    |||||||||||| | ||||||||||||| ||| | ||  |||||||||||||||||||| |||||    
T  5026153 aagcaaaaattggttaacaaaagttaatatatttagtccaaaatttgtaccaaatacatcaactt 5026217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 23971278 - 23971186
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttat-tttttggga 96  Q
    |||||||| ||||||||| | ||| ||| | ||| |||||||||||||||||||| |||||   |||| | |||||||||||| |||||||||    
T  23971278 aaaaattggtcaacaaaaataaatatatttagttcaaaatttgtaccaaatacatcaacttatattgatttatttttgcttatatttttggga 23971186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 6803353 - 6803308
Alignment:
Q  52 aaatacattaactttcgttgactaatttttgcttattttttgggac 97  Q
    ||||||||||||||| |||||| || |||||||||| |||||||||    
T  6803353 aaatacattaacttttgttgaccaaattttgcttatattttgggac 6803308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 28536785 - 28536846
Alignment:
Q  12 gatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    |||||| ||||||| |||||||| ||||||||||  | ||||||||||| ||||| ||||||    
T  28536785 gatcaataaaagttgatgtatctagttaaaaattcattccaaatacattcacttttgttgac 28536846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 94354 - 94413
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatt-tgtaccaaatacattaactttcgttgac 73  Q
    |||||||||||| |||||||| |||||||||| ||| ||||||||||| ||||| ||||||    
T  94354 tcaacaaaagttgatgtatctagttaaaaattctgt-ccaaatacattcacttttgttgac 94413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 5026217 - 5026141
Alignment:
Q  21 aagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggac 97  Q
    ||||| |||||| ||||  ||| |||| || ||||| ||||||||| ||| || ||||||||||||| |||||||||    
T  5026217 aagttgatgtatttggtacaaattttggactaaatatattaacttttgttaaccaatttttgcttatattttgggac 5026141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 12715406 - 12715335
Alignment:
Q  105 atattaatatattgaaattgaaaactttgtaaagaagatcaaaatttgagtctcacttaattaatgaagtgg 176  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12715406 atattaatatatagaaattgaaaactttgtaaagaagatcaaaatttgagtctcacttaattaatgaagtgg 12715335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 54235316 - 54235234
Alignment:
Q  4 caaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgctta 86  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||||| |||||||| || ||   |||||| |||||||||||    
T  54235316 caaaaattgctcaacaaaagttaatgtatttggttcaaaatttgtactaaatacatcaatttatattgactcatttttgctta 54235234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 2734228 - 2734177
Alignment:
Q  49 accaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||||||||| |||||||||||||| ||||| ||||||||||||    
T  2734228 accaaatacattaacttttgttgactaatttttacttatattttgggacgga 2734177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 55827338 - 55827282
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatac 57  Q
    |||||||||||| ||||||||||||||| ||| ||||||||| |||||| |||||||    
T  55827338 aagcaaaaattggtcaacaaaagttaatatatttggttaaaattttgtagcaaatac 55827282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 55827293 - 55827351
Alignment:
Q  40 aaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacg 98  Q
    |||||||  |||||||| ||||||||| |||||| ||||||||||||| ||||||||||    
T  55827293 aaaattttaaccaaatatattaacttttgttgaccaatttttgcttatattttgggacg 55827351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 12276841 - 12276926
Alignment:
Q  9 attgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgg 94  Q
    |||| ||| ||||||||||||||| || || ||||||| ||| |||||||| |||||  ||||||  |||||||||||| ||||||    
T  12276841 attggtcagcaaaagttaatgtatttgattcaaaatttatactaaatacatcaacttatgttgacctatttttgcttatattttgg 12276926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 24980642 - 24980723
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgctta 86  Q
    |||||| |||||||| ||||| |||||||||    ||| ||||||| ||||||||||| ||| |||||| ||||||||||||    
T  24980642 aaaaatggatcaacataagttgatgtatctgacacaaattttgtacaaaatacattaatttttgttgacaaatttttgctta 24980723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 57
Target Start/End: Complemental strand, 55762958 - 55762905
Alignment:
Q  4 caaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatac 57  Q
    ||||||||| ||||||||||||||| ||| || ||||||||||||| |||||||    
T  55762958 caaaaattggtcaacaaaagttaatatatttgattaaaaatttgtagcaaatac 55762905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 55762927 - 55762980
Alignment:
Q  51 caaatacattaactttcgttgactaatttttgcttattttttgggacggaggga 104  Q
    |||||| ||||||||| |||||| |||||||| |||| ||||||||||||||||    
T  55762927 caaatatattaacttttgttgaccaatttttgtttatattttgggacggaggga 55762980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 4423167 - 4423263
Alignment:
Q  6 aaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggagg 102  Q
    |||||||||||| |||| ||||| ||| || || |||||||||||||||||||| |||||   ||||   |||||||||||  ||||||||| ||||    
T  4423167 aaaattgatcaataaaaattaatatatttgattcaaaatttgtaccaaatacatcaacttatattgatccatttttgcttacattttgggacagagg 4423263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 4479669 - 4479609
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactt 65  Q
    |||||||||||||||||| ||||| ||| || || ||||||| ||||| ||||||||||||    
T  4479669 aaaaattgatcaacaaaaattaatatatttgattcaaaatttataccagatacattaactt 4479609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 12276917 - 12276809
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||| | |||||| ||||| |||||| | ||  ||| |||| | |||||||||||||||| | |||| ||| ||| ||||| |||| |||||||    
T  12276917 aagcaaaaataggtcaacataagttgatgtatttagtataaattttgaatcaaatacattaacttttgctgaccaatctttacttatattttaggacgga 12276818  T
Q  101 gggaatatt 109  Q
    || ||||||    
T  12276817 ggaaatatt 12276809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 48514591 - 48514647
Alignment:
Q  44 tttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||| |||||||||||||||||| ||||||||||||||| |||| || || ||||||    
T  48514591 tttggaccaaatacattaacttttgttgactaatttttgtttatattgtgagacgga 48514647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 96
Target Start/End: Original strand, 2871515 - 2871606
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttggga 96  Q
    ||||||| ||| | ||||||| || ||| |||| |||||||| ||| |||||||| |||||| ||| ||  |||||||||||| ||||||||    
T  2871515 aaaaatttatctataaaagttgatttatttggtcaaaaatttatacaaaatacatcaacttttgtttaccgatttttgcttatattttggga 2871606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 24704464 - 24704405
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    ||||||||||||||||||||| ||||||||||    ||||||||||| ||||| ||||||    
T  24704464 tcaacaaaagttaatgtatctagttaaaaattcagtccaaatacattcacttttgttgac 24704405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 3249702 - 3249756
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacat 59  Q
    |||||||| || |||||||||||||||| ||||| ||||||| ||||| ||||||    
T  3249702 aaaaattggtcgacaaaagttaatgtatttggttcaaaatttataccagatacat 3249756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30848689 - 30848640
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtac 50  Q
    |||||||||||| ||||||||| ||||||||| | ||| |||||||||||    
T  30848689 aagcaaaaattggtcaacaaaaattaatgtattttgttcaaaatttgtac 30848640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 41615710 - 41615771
Alignment:
Q  12 gatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    |||||||||||||| |||||| | ||||||||||    ||||||||||||||||| ||||||    
T  41615710 gatcaacaaaagttgatgtatttagttaaaaattaagtccaaatacattaacttttgttgac 41615771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 3249756 - 3249696
Alignment:
Q  27 atgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttat 87  Q
    |||||||||||  ||| |||| |||||||||||||||||| || ||| ||||||| |||||    
T  3249756 atgtatctggtataaattttgaaccaaatacattaacttttgtcgaccaatttttacttat 3249696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 41594741 - 41594689
Alignment:
Q  21 aagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    ||||| |||||||||||| |||||||| |||| |||||| |||||| ||||||    
T  41594741 aagttgatgtatctggttcaaaatttggaccatatacatcaacttttgttgac 41594689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 31323827 - 31323930
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||| ||||||||||||||||||| | ||| ||||||||||||| |||||| |||||  ||||||  |||||||||||  ||||||||| ||    
T  31323827 aagcaaaaattggtcaacaaaagttaatgtattttgttcaaaatttgtaccagatacatcaacttatgttgacctatttttgcttacattttgggacaga 31323926  T
Q  101 ggga 104  Q
    ||||    
T  31323927 ggga 31323930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 2282415 - 2282512
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggagg 102  Q
    |||||||| ||||||||||||||||||| | ||| |||| ||||| ||||||||| || ||  ||| |||||||||||||||| | ||||||||||||    
T  2282415 aaaaattggtcaacaaaagttaatgtatttagttcaaaaattgtatcaaatacatcaatttatgttaactaatttttgcttatatattgggacggagg 2282512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 30531191 - 30531294
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||  | |||||| ||||| |||||| ||||| ||| |||||||||||||||| |||||  ||||| | |||||||||||  ||||||||||||    
T  30531191 aagcaaaaacgggtcaacataagttgatgtatttggttcaaagtttgtaccaaatacatcaacttatgttgagtcatttttgcttacattttgggacgga 30531290  T
Q  101 ggga 104  Q
    ||||    
T  30531291 ggga 30531294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 31323911 - 31323808
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||| | |||||| ||||| |||||||||||  ||| |||| || ||||||||||||||| |||||| ||||||||||||  ||||||| | ||    
T  31323911 aagcaaaaataggtcaacataagttgatgtatctggtacaaattttgaacaaaatacattaacttttgttgaccaatttttgcttacattttgggtcaga 31323812  T
Q  101 ggga 104  Q
    ||||    
T  31323811 ggga 31323808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 28004707 - 28004617
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggaggga 104  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||||||| ||| |||| | || || |||||||  ||||| |||||||||    
T  28004707 tcaacaaaagttaatgtatttggctcaaaatttgtaccaaatacattaatttttgttggccaaattatgcttatactttggaacggaggga 28004617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 14446709 - 14446812
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||| ||| ||||||||||||||||||| | ||| ||||||| ||  | |||||| ||||| | ||||| ||||||| ||||  ||||||||||||    
T  14446709 aagcaaaagttggtcaacaaaagttaatgtatgttgttcaaaatttatattagatacatcaacttacattgaccaatttttacttacattttgggacgga 14446808  T
Q  101 ggga 104  Q
    ||||    
T  14446809 ggga 14446812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Original strand, 28004650 - 28004731
Alignment:
Q  15 caacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttggga 96  Q
    |||||||| ||||||||| ||||  ||| ||||  ||||||||||||||||| |||||||||||||  ||||| ||||||||    
T  28004650 caacaaaaattaatgtatttggtacaaattttgagccaaatacattaacttttgttgactaattttcccttatattttggga 28004731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 8215222 - 8215281
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaact 64  Q
    ||||||||||||||||| |||||||||| ||||   ||||||||| ||||||||||||||    
T  8215222 aaaaattgatcaacaaatgttaatgtatttggtctgaaatttgtatcaaatacattaact 8215281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 33822305 - 33822365
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactt 65  Q
    |||||||||| ||||||||||||| ||| | ||| |||||||||| ||||||||| |||||    
T  33822305 aaaaattgattaacaaaagttaatatatttagttcaaaatttgtatcaaatacatcaactt 33822365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 28756706 - 28756663
Alignment:
Q  49 accaaatacattaactttcgttgactaatttttgcttatttttt 92  Q
    ||||||||||||||||||||||||| || |||||||||| ||||    
T  28756706 accaaatacattaactttcgttgaccaaattttgcttatatttt 28756663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 9829908 - 9829962
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacat 59  Q
    |||||||  ||||||||| ||||||||| | ||| ||||||||||||||||||||    
T  9829908 aaaaattagtcaacaaaaattaatgtattttgtttaaaatttgtaccaaatacat 9829962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 8437858 - 8437813
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacat 59  Q
    ||||||||| ||||||||| || || ||||||||||||||||||||    
T  8437858 tcaacaaaaattaatgtatttgattcaaaatttgtaccaaatacat 8437813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 13320849 - 13320934
Alignment:
Q  27 atgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggagggaatattaat 112  Q
    |||||| ||||  |||||||  |||| |||||| |||||||||||||| ||| |||||||| |||||  | ||||||| |||||||    
T  13320849 atgtatttggtgtaaaatttagaccagatacatcaactttcgttgactcattgttgcttatattttgttatggagggagtattaat 13320934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 31522700 - 31522647
Alignment:
Q  6 aaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacat 59  Q
    ||||||| |||||||||||||||| || || || ||||||||||||| ||||||    
T  31522700 aaaattggtcaacaaaagttaatgcatttgattcaaaatttgtaccagatacat 31522647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 9675820 - 9675756
Alignment:
Q  40 aaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggaggga 104  Q
    ||||||||||||| || ||| |||||  |||||| ||||||||||||  ||||| ||||||||||    
T  9675820 aaaatttgtaccagatgcatcaacttatgttgaccaatttttgcttacattttgagacggaggga 9675756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 9675775 - 9675839
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactt 65  Q
    |||||||||||| |||||| ||||| ||| |||||||  ||| ||||||  ||||||||||||||    
T  9675775 aagcaaaaattggtcaacataagttgatgcatctggtacaaattttgtattaaatacattaactt 9675839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 32221567 - 32221468
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||  ||||||||||||||||||| ||||| |||||||||||||||||||| || ||  | |||  ||||||||||||  ||||||||||||    
T  32221567 aagcaaaaattagtcaacaaaagttaatgtatttggttcaaaatttgtaccaaatacatcaatttatgctgatcaatttttgcttacattttgggacgga 32221468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 32221483 - 32221586
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||||||| || || || |||||| ||||  ||| |||| |||||||||||||||||| |||||||||||||||||||  |||||  |||||    
T  32221483 aagcaaaaattgatcagcataaattgatgtatttggtacaaattttgaaccaaatacattaacttttgttgactaatttttgcttacattttgatacgga 32221582  T
Q  101 ggga 104  Q
    ||||    
T  32221583 ggga 32221586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 26914546 - 26914438
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||||||||||||| ||||||||| ||||| ||||||| ||| |||||||| |||||  |||| |  |||||||||||  ||||||||| ||    
T  26914546 aagcaaaaattgatcaacaaaaattaatgtatgtggttcaaaatttatactaaatacatcaacttaagttgtc-catttttgcttacattttgggacaga 26914448  T
Q  101 gggaatatta 110  Q
    | || |||||    
T  26914447 gtgagtatta 26914438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 31280172 - 31280229
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaa 62  Q
    |||||||||||||||||| ||||||||| ||||| ||||||||||||| |||||||||    
T  31280172 aaaaattgatcaacaaaatttaatgtatttggttcaaaatttgtaccatatacattaa 31280229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 47783095 - 47783192
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggagg 102  Q
    |||||||| |||| |||||||||||||| ||||| |||||||||| || ||||||   |||  ||||||| |||||||||||| |||||| |||||||    
T  47783095 aaaaattggtcaaaaaaagttaatgtatttggttcaaaatttgtatcagatacatcggcttatgttgactcatttttgcttatattttggaacggagg 47783192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 46829139 - 46829047
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||| ||||||||||||||||||| || | ||       ||||||||||||| ||||| |||||| ||||||||||||| |||| |||||||    
T  46829139 aagcaaaaattggtcaacaaaagttaatgtatttgataaa-------taccaaatacattgacttttgttgaccaatttttgcttatattttaggacgga 46829047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 46829062 - 46829158
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||||||||| ||||||||||| ||||||| ||||     |||| |  |||||||||||||||| |||||| ||||||||||||| |||| ||||| |    
T  46829062 aagcaaaaattggtcaacaaaagtcaatgtatttggt-----atttat--caaatacattaacttttgttgaccaatttttgcttatattttaggacgaa 46829154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 40905815 - 40905873
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacat 59  Q
    |||||||||||| ||||||||||||||| ||| ||||| ||||||| ||||| ||||||    
T  40905815 aagcaaaaattggtcaacaaaagttaatttatttggttcaaaatttataccagatacat 40905873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 31280248 - 31280161
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttatttttt 92  Q
    |||||| |||||||| || ||||||||| ||||  ||| |||| |||||||||||||| ||| |||||  ||||||| ||||| ||||    
T  31280248 aaaaatggatcaacataaattaatgtatatggtacaaattttgaaccaaatacattaaattttgttgatcaatttttacttatatttt 31280161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 33942968 - 33943027
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    |||||||||||| |||||||| ||||||||||    ||||||||||||||||| ||||||    
T  33942968 tcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattaacttttgttgac 33943027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 86
Target Start/End: Complemental strand, 40905873 - 40905814
Alignment:
Q  27 atgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgctta 86  Q
    |||||||||||  ||| |||| |||||||| ||||||||| |||||| ||||||||||||    
T  40905873 atgtatctggtataaattttgaaccaaataaattaacttttgttgaccaatttttgctta 40905814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 42170382 - 42170441
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    |||||||||||| |||||||||||||||||||    ||||||||||| ||||| ||||||    
T  42170382 tcaacaaaagttgatgtatctggttaaaaattcactccaaatacattcacttttgttgac 42170441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 46733045 - 46733115
Alignment:
Q  16 aacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgctta 86  Q
    ||||||| ||||||||| || || |||||||||| ||||| ||| | ||| |||||||| |||||||||||    
T  46733045 aacaaaaattaatgtatttgattcaaaatttgtatcaaatgcatcagcttacgttgacttatttttgctta 46733115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 22756966 - 22756913
Alignment:
Q  6 aaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacat 59  Q
    |||| ||||||||||||||||| |||| || || ||||||| ||||||||||||    
T  22756966 aaaaatgatcaacaaaagttaacgtatttgattcaaaatttataccaaatacat 22756913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 73
Target Start/End: Original strand, 36095714 - 36095775
Alignment:
Q  12 gatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    |||||||||||||| |||||||| ||||||||||    ||||||||||| ||||| ||||||    
T  36095714 gatcaacaaaagttgatgtatctagttaaaaattcagtccaaatacattcacttttgttgac 36095775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 40955795 - 40955855
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactt 65  Q
    ||||||||||||| |||| ||| ||||| | ||| |||||||||| || ||||||||||||    
T  40955795 aaaaattgatcaataaaaattattgtatttagttcaaaatttgtatcatatacattaactt 40955855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 13209977 - 13210041
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactt 65  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||||| || |||||| |||||    
T  13209977 aagcaaaaattgatcaacaaaagttaatgtatttggttcaaaatttgtatcagatacatcaactt 13210041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 35901132 - 35901039
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgg 94  Q
    |||||||||| | |||||||||||||||||||  || | ||||||||||| || ||||| |||||  ||||||| |||||||||||| ||||||    
T  35901132 aagcaaaaataggtcaacaaaagttaatgtattgggctcaaaatttgtactaattacatcaacttatgttgactcatttttgcttatattttgg 35901039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 11114253 - 11114349
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggag 101  Q
    |||| ||||||||||||| |||||||||   ||| ||||||| |||||||||||| |||||  |||||  ||||||| ||||| |||||||||||||    
T  11114253 aaaagttgatcaacaaaaattaatgtattcagtttaaaatttataccaaatacatcaacttatgttgatcaatttttacttatattttgggacggag 11114349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Original strand, 8777785 - 8777846
Alignment:
Q  4 caaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactt 65  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||| ||  ||||||||||||||    
T  8777785 caaaaattgatcaacaaaagttaatatatttggttcaaaatttatattaaatacattaactt 8777846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 33557868 - 33557787
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgctta 86  Q
    ||||||||||||| |||||||||||||| | ||| |||||||||| ||||||||| |||||  |||||  | ||||||||||    
T  33557868 aaaaattgatcaataaaagttaatgtatttagttcaaaatttgtatcaaatacataaacttatgttgatcattttttgctta 33557787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 29111053 - 29110997
Alignment:
Q  4 caaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacatt 60  Q
    ||||||||||||||| ||| ||||||||| ||||| ||||||| |||||||||||||    
T  29111053 caaaaattgatcaacgaaacttaatgtatttggttcaaaatttataccaaatacatt 29110997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 9548143 - 9548066
Alignment:
Q  4 caaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaattttt 81  Q
    ||||||||| ||||||||| ||| | ||| ||||| ||||||||||| |||||||| |||||  ||||||| ||||||    
T  9548143 caaaaattgttcaacaaaaattattatatttggttcaaaatttgtactaaatacatcaacttatgttgactcattttt 9548066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 13210048 - 13209977
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgctt 85  Q
    |||||| ||||| ||||||||| |  ||| |||| |||||||||||||||||| |||||  |||||||||||    
T  13210048 tcaacataagttgatgtatctgatacaaattttgaaccaaatacattaacttttgttgatcaatttttgctt 13209977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 25601036 - 25601095
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    ||||||||||||||||||||| ||||||||||    ||||||||||| ||||| ||||||    
T  25601036 tcaacaaaagttaatgtatctagttaaaaattcagtccaaatacattcacttttgttgac 25601095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 29110997 - 29111080
Alignment:
Q  26 aatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggagggaatatt 109  Q
    ||||||| ||||  ||| |||| |||||||||||||| |||||||||  |||||||| |||| ||||| |||| ||| ||||||    
T  29110997 aatgtatttggtataaattttgaaccaaatacattaagtttcgttgatcaatttttgtttatattttgagacgaaggaaatatt 29111080  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 100
Target Start/End: Complemental strand, 29798034 - 29797938
Alignment:
Q  7 aaattgatcaacaaaagttaatgtatctg---gttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacgga 100  Q
    |||||| ||||||||| ||||||||| ||   ||| |||||||||||||||||||| || ||  ||| ||| |||||||||||  |||||| |||||    
T  29798034 aaattggtcaacaaaaattaatgtatttgttggttcaaaatttgtaccaaatacataaatttatgttaactcatttttgcttacattttggaacgga 29797938  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 33557788 - 33557884
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggac 97  Q
    ||||||||| ||||||||| ||||| |||||| || |  ||| |||| || |||||||||||||||  ||||  ||||||| ||||| |||| ||||    
T  33557788 aagcaaaaaatgatcaacataagtttatgtatttgatacaaattttgaactaaatacattaacttttattgatcaatttttacttatgttttaggac 33557884  T

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Target: scaffold2113 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 660 - 571
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggacggaggga 104  Q
    ||||||||||||| ||||| | ||| ||||||||||||||||| ||||||||| ||| || || ||||||||||  |||||||||||||||    
T  660 tcaacaaaagttattgtatttagttcaaaatttgtaccaaataaattaacttttgtt-accaaattttgcttatactttgggacggaggga 571  T

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Target: scaffold2113; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 604 - 684
Alignment:
Q  16 aacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttggga 96  Q
    ||||||||||||| ||| ||||  ||| |||| || ||||||| ||||||| |||||||||||||  ||||| ||||||||    
T  604 aacaaaagttaatttatttggtacaaattttgaactaaatacaataacttttgttgactaattttcacttatattttggga 684  T

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Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 13187 - 13251
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactt 65  Q
    |||||||||| ||||||||||||||||||||| ||||| ||||||||||| | |||||| |||||    
T  13187 aagcaaaaatggatcaacaaaagttaatgtatttggtttaaaatttgtacaagatacatcaactt 13251  T

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Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 94959 - 95039
Alignment:
Q  1 aagcaaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaattttt 81  Q
    |||| |||||||||||| |||| |||||||||   ||| |||||||||||||||||||| |||||  |||||| |||||||    
T  94959 aagcgaaaattgatcaataaaaattaatgtattatgttcaaaatttgtaccaaatacatcaacttatgttgaccaattttt 95039  T

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Target: scaffold0126 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 28184 - 28234
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaat 55  Q
    |||||||||| ||||||||||||||||| ||||| |||||| |||||||||    
T  28184 aaaaattgattaacaaaagttaatgtatttggttcaaaattcgtaccaaat 28234  T

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Target: scaffold0097 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 37928 - 37982
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacat 59  Q
    |||||||  ||||||||||||||||||| ||||| ||||||| ||||||||||||    
T  37928 aaaaattagtcaacaaaagttaatgtatttggtttaaaatttataccaaatacat 37982  T

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Target: scaffold0097; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 81
Target Start/End: Complemental strand, 37960 - 37928
Alignment:
Q  49 accaaatacattaactttcgttgactaattttt 81  Q
    |||||||||||||||||| ||||||||||||||    
T  37960 accaaatacattaacttttgttgactaattttt 37928  T

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Target: scaffold0067 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 35957 - 36049
Alignment:
Q  5 aaaaattgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgactaatttttgcttattttttgggac 97  Q
    ||||||||||||||||  |||||||||| ||||  |||||||||| ||||||||| || ||   |||||| ||||||| |||  |||||||||    
T  35957 aaaaattgatcaacaaccgttaatgtatttggtacaaaatttgtatcaaatacatcaatttatattgactcatttttgtttacattttgggac 36049  T

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Target: scaffold0650 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 73
Target Start/End: Original strand, 21 - 80
Alignment:
Q  14 tcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    |||||||||||| |||||| |||||||||||||   |||||||||| |||||| ||||||    
T  21 tcaacaaaagttgatgtatttggttaaaaatttagtccaaatacatcaacttttgttgac 80  T

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Target: scaffold0003 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 73
Target Start/End: Complemental strand, 312816 - 312753
Alignment:
Q  10 ttgatcaacaaaagttaatgtatctggttaaaaatttgtaccaaatacattaactttcgttgac 73  Q
    ||||||||||||| || |||||||| ||| |||||||| | || ||||||||||||| ||||||    
T  312816 ttgatcaacaaaaattgatgtatctagtttaaaatttggatcagatacattaacttttgttgac 312753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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