View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_123 (Length: 252)

Name: NF0784_low_123
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_123
NF0784_low_123
[»] chr1 (3 HSPs)
chr1 (20-242)||(8416310-8416532)
chr1 (136-206)||(14555301-14555371)
chr1 (120-169)||(51826810-51826859)
[»] chr4 (3 HSPs)
chr4 (116-169)||(28100552-28100605)
chr4 (116-169)||(44646782-44646835)
chr4 (116-168)||(36094279-36094331)
[»] chr2 (1 HSPs)
chr2 (116-229)||(3858156-3858269)
[»] chr5 (3 HSPs)
chr5 (115-169)||(26795602-26795656)
chr5 (116-170)||(39753495-39753549)
chr5 (115-163)||(26806666-26806714)
[»] chr3 (3 HSPs)
chr3 (115-169)||(10104983-10105037)
chr3 (115-160)||(46749321-46749366)
chr3 (115-163)||(10225759-10225807)
[»] chr7 (1 HSPs)
chr7 (116-229)||(46037320-46037433)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 8416310 - 8416532
Alignment:
Q  20 ttgaaggaaccacaaaacttttttgtaagcggtaaaaattcatgaaagaatagcattagatttgtacttccttttttaaacatcataataatctaaattg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  8416310 ttgaaggaaccacaaaacttttttgtaagcggtaaaaattcatgaaagaatagcactagatttgtacttccttttttaaacatcgtaataatctaaattg 8416409  T
Q  120 aatatcataagacttatttattttttattaaagtcttgattgaacaccacctaaattttacatcataaaatagtattttaaaatcctataaattcttaat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8416410 aatatcataagacttatttattttttattaaagtcttgattgaacaccacctaaattttacatcataaaatagtattttaaaatcctaaaaattcttaat 8416509  T
Q  220 ccaaaacacctccccaagtataa 242  Q
    |||||||||||||||||||||||    
T  8416510 ccaaaacacctccccaagtataa 8416532  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 14555301 - 14555371
Alignment:
Q  136 tttattttttattaaagtcttgattgaacaccacctaaattttacatcataaaatagtattttaaaatcct 206  Q
    ||||| |||||| ||||||||||||||| |||||| || ||||  || |||||| ||| ||||||||||||    
T  14555301 tttatattttataaaagtcttgattgaataccaccaaacttttttattataaaaaagtcttttaaaatcct 14555371  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 51826810 - 51826859
Alignment:
Q  120 aatatcataagacttatttattttttattaaagtcttgattgaacaccac 169  Q
    |||||||| ||| |||||||| |||||| ||||||||||||||| |||||    
T  51826810 aatatcatgagatttatttatgttttataaaagtcttgattgaataccac 51826859  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 28100552 - 28100605
Alignment:
Q  116 attgaatatcataagacttatttattttttattaaagtcttgattgaacaccac 169  Q
    |||||||| ||||||| |||||||| |||||| ||||||||||||||| |||||    
T  28100552 attgaataccataagatttatttatattttataaaagtcttgattgaataccac 28100605  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 44646835 - 44646782
Alignment:
Q  116 attgaatatcataagacttatttattttttattaaagtcttgattgaacaccac 169  Q
    |||||||| ||||||| |||||||| |||||| ||||||||||||||| |||||    
T  44646835 attgaataccataagatttatttatgttttataaaagtcttgattgaataccac 44646782  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 36094279 - 36094331
Alignment:
Q  116 attgaatatcataagacttatttattttttattaaagtcttgattgaacacca 168  Q
    |||||||||||||| | |||||||| |||||| ||| ||||||||||| ||||    
T  36094279 attgaatatcataatatttatttatgttttataaaaatcttgattgaatacca 36094331  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 3858156 - 3858269
Alignment:
Q  116 attgaatatcataagacttatttattttttattaaagtcttgattgaacaccacctaaattttacatcataaaatagtattttaaaatcctataaattct 215  Q
    |||||||||||| ||| |||||||| || ||| ||||||||||||||| ||||   || ||||  ||||| ||| ||| |||||||||||  |||| |||    
T  3858156 attgaatatcatgagatttatttatattctataaaagtcttgattgaataccaaaaaagttttttatcattaaaaagtcttttaaaatcccttaaaatct 3858255  T
Q  216 taatccaaaacacc 229  Q
    |||| ||| |||||    
T  3858256 taattcaatacacc 3858269  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 26795602 - 26795656
Alignment:
Q  115 aattgaatatcataagacttatttattttttattaaagtcttgattgaacaccac 169  Q
    ||||||||| || |||| |||||||| |||||| ||||||||||||||| |||||    
T  26795602 aattgaataccacaagatttatttatattttataaaagtcttgattgaataccac 26795656  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 170
Target Start/End: Complemental strand, 39753549 - 39753495
Alignment:
Q  116 attgaatatcataagacttatttattttttattaaagtcttgattgaacaccacc 170  Q
    ||||||||||| |||| || ||||| |||||| ||||||||||||||| ||||||    
T  39753549 attgaatatcacaagatttttttatattttataaaagtcttgattgaataccacc 39753495  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 26806666 - 26806714
Alignment:
Q  115 aattgaatatcataagacttatttattttttattaaagtcttgattgaa 163  Q
    ||||||||| || |||| |||||||| |||||| |||||||||||||||    
T  26806666 aattgaataccacaagatttatttatattttataaaagtcttgattgaa 26806714  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 10104983 - 10105037
Alignment:
Q  115 aattgaatatcataagacttatttattttttattaaagtcttgattgaacaccac 169  Q
    ||||||||| || |||| |||||||| |||||| ||||||||||||||| |||||    
T  10104983 aattgaataccacaagatttatttatattttataaaagtcttgattgaataccac 10105037  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 46749366 - 46749321
Alignment:
Q  115 aattgaatatcataagacttatttattttttattaaagtcttgatt 160  Q
    ||||||||| ||||||| |||||||| |||||| ||||||||||||    
T  46749366 aattgaataccataagatttatttatattttataaaagtcttgatt 46749321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 10225759 - 10225807
Alignment:
Q  115 aattgaatatcataagacttatttattttttattaaagtcttgattgaa 163  Q
    ||||||||| || |||| |||||||| |||||| |||||||||||||||    
T  10225759 aattgaataccacaagatttatttatattttataaaagtcttgattgaa 10225807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 116 - 229
Target Start/End: Original strand, 46037320 - 46037433
Alignment:
Q  116 attgaatatcataagacttatttattttttattaaagtcttgattgaacaccacctaaattttacatcataaaatagtattttaaaatcctataaattct 215  Q
    ||||||||||| |||| || ||||  |||||| ||||||||||||||| | |||  || ||||  || |||||| ||| ||||||||||| || ||||||    
T  46037320 attgaatatcacaagatttgtttacattttataaaagtcttgattgaatatcactaaactttttaattataaaaaagtcttttaaaatcccattaattct 46037419  T
Q  216 taatccaaaacacc 229  Q
     ||| ||| |||||    
T  46037420 caattcaatacacc 46037433  T

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