View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0784_low_131 (Length: 251)
Name: NF0784_low_131
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_131 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 26)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 5250569 - 5250802
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5250569 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacgcaagctgagcaagagtggtcttacccatt |
5250668 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5250669 |
ccaccgagacccactatgctgattattggtacatgattgccactgtttatgtcagacagtaaaaaatcaattaactcctccttgtcaccatctctaccat |
5250768 |
T |
|
| Q |
216 |
atatgctcaattcatccaccaaagatgtagttgg |
249 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||| |
|
|
| T |
5250769 |
atatgctcgattcatccaccaaagctgtagttgg |
5250802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 249
Target Start/End: Complemental strand, 4388566 - 4388333
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4388566 |
atcaaaagtttctgaaacgtagacccaagctttaagttcaaaatgctctttcatcctgcggtcattgtacacaagctgagcaagagtggtcttacccatt |
4388467 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||| |||||||| | |||||||| |
|
|
| T |
4388466 |
ccaccgagacccactatgctgattattggtacttggttgccgctgtctatgtcagacagtaaaaagttgactaactcctctttgtcaccgtttctaccat |
4388367 |
T |
|
| Q |
216 |
atatgctcaattcatccaccaaagatgtagttgg |
249 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| |
|
|
| T |
4388366 |
atatgctcgatccatccaccaaagatgtagttgg |
4388333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 5268456 - 5268691
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||| ||| ||||| ||||| ||||| ||||| |||||||| || |||||||| ||||||||||||||| |
|
|
| T |
5268456 |
atcaaaaatttccgaaacatagacccaggctttatgtttaaaattctccttgatcctttggtcattgtacacgagttgagcaagggtggtcttacccatt |
5268555 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5268556 |
ccaccgagacccactatgctgattattggtacatggttgcccttgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccat |
5268655 |
T |
|
| Q |
216 |
atatgctcaattcatccaccaaagatgtagttggca |
251 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5268656 |
atatgctggattcatccaccaaagatgtagttggca |
5268691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 5299134 - 5299366
Alignment:
| Q |
19 |
aaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattcca |
118 |
Q |
| |
|
||||||||| |||||||||||||| ||||| |||||||| || | ||| ||| ||| || ||||||||||| |||||||| ||||| || ||||||||| |
|
|
| T |
5299134 |
aaaagtttccgaaacatagacccaggcttttagttcaaactgtttctgtatcatgttgttattgtacacaagttgagcaagggtggtttttcccattcca |
5299233 |
T |
|
| Q |
119 |
ccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatata |
218 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||| |||| |||||||| || |||||||| ||| ||| ||||| |||||||||||||| ||||||| |
|
|
| T |
5299234 |
cctagacccactatgctgattattggtacacggtcgccagcatctatgtcggaaagtaaaaatttggttacttcctctttgtcaccatctctgccatata |
5299333 |
T |
|
| Q |
219 |
tgctcaattcatccaccaaagatgtagttggca |
251 |
Q |
| |
|
||||| |||||||||||||||||||| |||||| |
|
|
| T |
5299334 |
tgctcgattcatccaccaaagatgtacttggca |
5299366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 8455054 - 8455272
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||| ||| ||| ||| ||||||||||||| |||||| ||||| |||||||| |
|
|
| T |
8455054 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgctcctttatcttgttgtcattgtacacaagcttagcaagggtggttttacccatc |
8455153 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccat |
215 |
Q |
| |
|
|| || | ||| ||||||||||||||||| || ||||||||||| || || | | |||||||| |||||||| | ||||| ||| |||||| ||||| |
|
|
| T |
8455154 |
cctcctaaaccgactatgctgattattggaacctggttgccactatcattgcctgcaagtaaaaacttgattaatttttccttatcaacatctcgaccat |
8455253 |
T |
|
| Q |
216 |
atatgctcaattcatccac |
234 |
Q |
| |
|
|||||||| | |||||||| |
|
|
| T |
8455254 |
atatgctcgactcatccac |
8455272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 220
Target Start/End: Original strand, 6947669 - 6947873
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
|||||||| ||||||||| |||||||| | |||||| ||||||||||||| ||| ||| ||| ||||||||||||| |||||| ||||| || ||||| |
|
|
| T |
6947669 |
atcaaaagattctgaaacgtagacccatgttttaaggtcaaaatgctcctctatcttgttgtcattgtacacaagcttagcaagggtggttttccccatc |
6947768 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccat |
215 |
Q |
| |
|
|| || | ||||||||||||||||||||| || |||||||||||||| || | | |||||||| |||||||||| ||||| ||| |||||||||||| |
|
|
| T |
6947769 |
cctcctaaacccactatgctgattattggaacctggttgccactgtcattgcctgcaagtaaaaacttgattaacttgtccttatcatcatctctaccat |
6947868 |
T |
|
| Q |
216 |
atatg |
220 |
Q |
| |
|
||||| |
|
|
| T |
6947869 |
atatg |
6947873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 6736394 - 6736596
Alignment:
| Q |
20 |
aaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccac |
119 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||| || ||| ||| ||||||||||||||||| |||||| ||||| || ||||| || | |
|
|
| T |
6736394 |
aaagattctgaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctc |
6736493 |
T |
|
| Q |
120 |
cgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatat |
219 |
Q |
| |
|
| | |||||||||||| |||||||| || |||||||||||||| || | | |||||||| ||||||| | ||||| ||| |||||||||||||||| |
|
|
| T |
6736494 |
ctaaacccactatgctaattattggaacctggttgccactgtcattgcctgtaagtaaaaacttgattagtttttccttatcatcatctctaccatatat |
6736593 |
T |
|
| Q |
220 |
gct |
222 |
Q |
| |
|
||| |
|
|
| T |
6736594 |
gct |
6736596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 6448411 - 6448286
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||| ||| ||| || ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
6448411 |
atcaaaatattctgaaacatagacccaagatttaagttcaaaatgctcctttatcatgttgtgattgtacacaagcttagcaaaagtggtcttacccatc |
6448312 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgattat |
141 |
Q |
| |
|
||||| |||||||||||||||||||| |
|
|
| T |
6448311 |
ccacccagacccactatgctgattat |
6448286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 6554063 - 6553861
Alignment:
| Q |
20 |
aaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccac |
119 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||| || ||| ||| ||||||||||||||||| |||||| ||||| || ||||| || | |
|
|
| T |
6554063 |
aaagattctgaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatccctc |
6553964 |
T |
|
| Q |
120 |
cgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatat |
219 |
Q |
| |
|
| | ||||||||||||||||||||| || ||||||||| ||| || | |||||||| |||||||| | ||||| ||| |||| ||||||||||| |
|
|
| T |
6553963 |
ctaaacccactatgctgattattggaacccggttgccaccgtcattgccttcaagtaaaaacttgattaatttttccttatcaacatccctaccatatat |
6553864 |
T |
|
| Q |
220 |
gct |
222 |
Q |
| |
|
||| |
|
|
| T |
6553863 |
gct |
6553861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 6721700 - 6721467
Alignment:
| Q |
8 |
cgaagaatatcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtct |
107 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||||||||||||||||| | |||||| ||||||||||| ||||| |||||||| ||||| || |||| |
|
|
| T |
6721700 |
cgaagaacatcaaaagattctgaaagatagacccaagctttaagttcatattgctccactatcctgtggtcattgtaaacaagctgggcaagggttgtct |
6721601 |
T |
|
| Q |
108 |
tacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatc |
207 |
Q |
| |
|
|||| || ||| ||||||||||| |||||||| || || |||||| ||||||| | ||||| || || |||||||||| || || || ||| || |
|
|
| T |
6721600 |
tacctatcccaatcagacccactatactgattatgggcacctggttgtcactgtcactatcagaaagcaagaaattgattatttcttctttctcatgctc |
6721501 |
T |
|
| Q |
208 |
tctaccatatatgctcaattcatccaccaaagat |
241 |
Q |
| |
|
|| |||||||||| | ||||||||||||||||| |
|
|
| T |
6721500 |
tcgaccatatatgaccgattcatccaccaaagat |
6721467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 8590129 - 8590347
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
|||||||| ||| |||||||||||||| |||||||| ||||||||||| | ||| ||| ||||||||||||||||| |||||| ||||| || ||||| |
|
|
| T |
8590129 |
atcaaaagattcagaaacatagacccatgctttaagctcaaaatgctcttctatcttgttgtcgttgtacacaagcttagcaagggtggttttccccatc |
8590228 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccat |
215 |
Q |
| |
|
|| || | ||| ||||||||||||||||| || |||||||||| || || | | |||||||| ||||||| | | ||| ||| |||||||||||| |
|
|
| T |
8590229 |
cctcctaaaccgactatgctgattattggaacgcggttgccactatcattgcctgcaagtaaaaacttgattagttttttcttatcaacatctctaccat |
8590328 |
T |
|
| Q |
216 |
atatgctcaattcatccac |
234 |
Q |
| |
|
|||||||| | |||||||| |
|
|
| T |
8590329 |
atatgctcgactcatccac |
8590347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 6519791 - 6519647
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||| || || ||| ||| ||||| ||| | |||||||| ||||| ||||||||| |
|
|
| T |
6519791 |
atcaaaagattctgaaacatagacccatgctttaagttcaaaatgcttctttgtcatgttgtcattgtagacatgttgagcaagggtggttttacccatt |
6519692 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgattattggtacatggttgccactg |
160 |
Q |
| |
|
|| || | ||||||||||||||||||||| || ||||| |||||| |
|
|
| T |
6519691 |
cctcctaaacccactatgctgattattggaacctggttaccactg |
6519647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 222
Target Start/End: Complemental strand, 6479611 - 6479405
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
|||| ||| |||||||||||||||||| ||||||||||||||||| |||| ||| ||| || |||||||||||||| |||||| ||||| || ||||| |
|
|
| T |
6479611 |
atcataagattctgaaacatagacccatgctttaagttcaaaatgttcctctatcttgttgttgttgtacacaagcttagcaagggtggttttccccatc |
6479512 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccat |
215 |
Q |
| |
|
|| || | ||| |||||||||||||| || || ||| | |||||||| || | | |||||||| ||||| | || ||||||||| ||||||| |||| |
|
|
| T |
6479511 |
cctcctaaaccaactatgctgattatcggaacctgggttccactgtcattgcctgcaagtaaaaatttgataagttcttccttgtcaacatctctgccat |
6479412 |
T |
|
| Q |
216 |
atatgct |
222 |
Q |
| |
|
||||||| |
|
|
| T |
6479411 |
atatgct |
6479405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 220
Target Start/End: Complemental strand, 6590957 - 6590753
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||| |||||| | ||| ||||||| ||||| |||||| | ||||| || ||||||||||| |
|
|
| T |
6590957 |
atcaaaagattttgaaacatagacccaagctttaagttcaaattgctccagtatcttgtggtccttgtaaacaagccgggcaagggttgtcttacccatc |
6590858 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccat |
215 |
Q |
| |
|
||| | ||||||||| | |||||| |||||||||||| ||||| |||| || |||||||| || |||| ||||| || ||| |||||||||| |
|
|
| T |
6590857 |
ccaatcatacccactatacagattatgggtacatggttgtgactgtgactgtctgaaagtaaaaatttaattatttcctctttctcatgctctctaccat |
6590758 |
T |
|
| Q |
216 |
atatg |
220 |
Q |
| |
|
||||| |
|
|
| T |
6590757 |
atatg |
6590753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 8568577 - 8568342
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||| |||| || ||| ||||||| ||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
8568577 |
atcaaaagattctgaaacatggacccaagctttaagttcaaattgcttctctatcttgtggtcattgtagacaagtcgagcaagggtggtcttacccatc |
8568478 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccat |
215 |
Q |
| |
|
||||| |||||||| || || |||| ||||||||||||| || |||| | || ||| ||||||||| | | || ||| |||||||||||| |
|
|
| T |
8568477 |
ccacctagacccacaatacttattacgctcacatggttgccaccatcattgtctaaaagcaaataattgattattttatttttatcatcatctctaccat |
8568378 |
T |
|
| Q |
216 |
atatgctcaattcatccaccaaagatgtagttggca |
251 |
Q |
| |
|
|||||| |||||||||||||||| | |||||||| |
|
|
| T |
8568377 |
atatgcaagattcatccaccaaagacgcagttggca |
8568342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 250
Target Start/End: Original strand, 8471977 - 8472195
Alignment:
| Q |
32 |
acatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccacta |
131 |
Q |
| |
|
|||| ||||||| ||||||||||||| |||| | |||||| ||||| ||||| |||||||||||||| |||||||| ||||| ||| | |||||||| |
|
|
| T |
8471977 |
acatggacccaaactttaagttcaaactgcttgtccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatcccaggcaaacccacta |
8472076 |
T |
|
| Q |
132 |
tgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatc |
231 |
Q |
| |
|
||||||| ||| ||| ||||||||| |||| ||| ||| || ||| | |||||||| || || |||||||| ||||||||| |||| ||||||| |
|
|
| T |
8472077 |
tgctgatagttgatacttggttgccattgtcgttgtaagaaagcaaatacttgattaattcttctttgtcaccttctctaccacgtatggaagattcatc |
8472176 |
T |
|
| Q |
232 |
caccaaagatgtagttggc |
250 |
Q |
| |
|
||| ||||||| ||||||| |
|
|
| T |
8472177 |
cactaaagatgcagttggc |
8472195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 13270215 - 13270086
Alignment:
| Q |
18 |
caaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattcc |
117 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||||||||| | ||||||||||| || |
|
|
| T |
13270215 |
caaaagattctggaacatagacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgagcaagggctgtcttacccatccc |
13270116 |
T |
|
| Q |
118 |
accgagacccactatgctgattattggtac |
147 |
Q |
| |
|
||||||||||| |||||||| ||||| |
|
|
| T |
13270115 |
catcagacccactatactgattatgggtac |
13270086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 5281084 - 5281208
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||| | || || | |||||| |||||||||| |||||| |||||||||||||| |
|
|
| T |
5281084 |
atcaaaaaattctgaaacatagacccaagctttatgttcaaaatgctctttaattctatcgtcgttatacacaagctcagcaagggtggtcttacccatc |
5281183 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgatta |
140 |
Q |
| |
|
||||| |||||||||| |||||| |
|
|
| T |
5281184 |
ccaccagaacccactatggtgatta |
5281208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 7750427 - 7750559
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||| ||||| | |||| || ||||||||||| |
|
|
| T |
7750427 |
atcaaaagattctgaaacatagacccaagctttaagttcaaattgctcatgtatcttgtggtcgttgtaaacaagtcgggcaatggttgtcttacccatc |
7750526 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgattattggtaca |
148 |
Q |
| |
|
||| | ||||||||| |||||||| |||||| |
|
|
| T |
7750527 |
ccaatcacacccactatactgattatgggtaca |
7750559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 6882935 - 6883111
Alignment:
| Q |
19 |
aaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattcca |
118 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||||||||||||||| ||| ||| ||| ||||| |||||||| || ||||| ||||||||||| || |
|
|
| T |
6882935 |
aaaagattctggaacattcacccaagctttaagttcaaaatgctccgtgatcatgtcgtcattgtaaacaagctgggcgagagttgtcttacccatcccc |
6883034 |
T |
|
| Q |
119 |
ccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctc |
195 |
Q |
| |
|
||||||||||| || ||||| ||| || ||||| |||||| |||||||| |||||||| || ||||| ||||| |
|
|
| T |
6883035 |
atcagacccactatactaattatgggtgcaaggttgtcactgtgaatgtcagaaagtaaaaatttaattaattcctc |
6883111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 6266122 - 6266249
Alignment:
| Q |
19 |
aaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattcca |
118 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||| ||||| | |||||||| || || |
|
|
| T |
6266122 |
aaaagtttctgaaacatggacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttaccaatcccc |
6266221 |
T |
|
| Q |
119 |
ccgagacccactatgctgattattggta |
146 |
Q |
| |
|
||||||||||| |||||||| |||| |
|
|
| T |
6266222 |
gtcagacccactatactgattatgggta |
6266249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 6259595 - 6259786
Alignment:
| Q |
29 |
gaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagaccca |
128 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||||||| ||||| ||||| ||||| |||||||| ||||| | ||||||||||| || ||||||| |
|
|
| T |
6259595 |
gaaacatggacccaagctttaaattcaaactgctcctgtatcctatggtcattgtaaacaagctgggcaagggctgtcttacccatccccgtcagaccca |
6259694 |
T |
|
| Q |
129 |
ctatgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatg |
220 |
Q |
| |
|
|||| |||||||| | ||| ||||| | ||| |||| || |||||||| ||||||| ||||| || |||| ||||||||||||||| |
|
|
| T |
6259695 |
ctatactgattatggatacctggtttcggttgtaactgtctgaaagtaaaaatttgattatttcctctttttcacgttctctaccatatatg |
6259786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 162
Target Start/End: Original strand, 6900516 - 6900662
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||| ||||||||||||| ||| ||| ||| | ||| |||||||| || || || ||||||||||| |
|
|
| T |
6900516 |
atcaaaagattccgaaacatggacccaagctttaatttcaaaatgctccacgatcatgtcgtcatagtaaacaagctgggcgagggttgtcttacccatc |
6900615 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgattattggtacatggttgccactgtc |
162 |
Q |
| |
|
||| | |||||||| |||||||| ||||| ||||||| |||||| |
|
|
| T |
6900616 |
ccaatcacacccactacactgattatgggtacttggttgcgactgtc |
6900662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 249
Target Start/End: Complemental strand, 6838466 - 6838297
Alignment:
| Q |
80 |
ttgtacacaagctgagcaagagtggtcttacccattccaccgagacccactatgctgattattggtacatggttgccactgtctatgtcagacagtaaaa |
179 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||| ||||| | ||| ||||||||||| ||| ||| ||||||||| |||| ||| |||||| ||| |
|
|
| T |
6838466 |
ttgtagacaagctgagcaagggtggtctttcccatcccacccaaaccaactatgctgatagttgatacttggttgccattgtccttgtaagacagcaaat |
6838367 |
T |
|
| Q |
180 |
aattgattaactcctccttgtcaccatctctaccatatatgctcaattcatccaccaaagatgtagttgg |
249 |
Q |
| |
|
| || |||| || || || ||||| ||||||||| |||| |||||||||||||||||| |||||| |
|
|
| T |
6838366 |
agttaattatttcttctttttcaccttctctaccacgtatggaagattcatccaccaaagatgcagttgg |
6838297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 6142726 - 6142842
Alignment:
| Q |
31 |
aacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccact |
130 |
Q |
| |
|
||||| ||||||||| ||||||||||| |||||||| ||||||||||| ||||| | || ||| ||||| || |||||||| || ||| ||||| ||| |
|
|
| T |
6142726 |
aacatggacccaagcattaagttcaaattgctcctgtatcctgtggtcattgtaaataaactgcgcaagggttgtcttacctatcccaggaagacctact |
6142825 |
T |
|
| Q |
131 |
atgctgattattggtac |
147 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
6142826 |
atactgattatgggtac |
6142842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 6917526 - 6917657
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccatt |
115 |
Q |
| |
|
|||||||| ||||||| ||| |||||||||||||||||| | ||||||| |||| | || || ||||| ||||| || ||||| || || ||||| || |
|
|
| T |
6917526 |
atcaaaagattctgaatcatggacccaagctttaagttccacatgctccatcatcttatgatcattgtaaacaagttgcgcaagggtcgtattacctatc |
6917625 |
T |
|
| Q |
116 |
ccaccgagacccactatgctgattattggtac |
147 |
Q |
| |
|
||| ||||| ||||| |||||||| ||||| |
|
|
| T |
6917626 |
ccaataagaccaactatactgattatgggtac |
6917657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 7102 - 6960
Alignment:
| Q |
20 |
aaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccac |
119 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||| || ||| ||| ||| ||||||||||||| |||||| ||||| || ||||| || | |
|
|
| T |
7102 |
aaagattctgaaacatagacccatgctttaagttcaaaatgcttctttatcttgttgtctttgtacacaagcttagcaagggtggttttccccatccctc |
7003 |
T |
|
| Q |
120 |
cgagacccactatgctgattattggtacatggttgccactgtc |
162 |
Q |
| |
|
| | ||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
7002 |
ctaaacccactatgctgattattggaacctggttgccactgtc |
6960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 250
Target Start/End: Complemental strand, 6572911 - 6572693
Alignment:
| Q |
32 |
acatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaagctgagcaagagtggtcttacccattccaccgagacccacta |
131 |
Q |
| |
|
|||| ||||||||||||||| ||||| || | || |||||| ||||| ||||| |||||||||||||| |||||||| ||||| ||||| | |||||||| |
|
|
| T |
6572911 |
acatggacccaagctttaaggtcaaactgtttctccatcctctggtcattgtagacaagctgagcaagggtggtcttccccatcccacccaaacccacta |
6572812 |
T |
|
| Q |
132 |
tgctgattattggtacatggttgccactgtctatgtcagacagtaaaaaattgattaactcctccttgtcaccatctctaccatatatgctcaattcatc |
231 |
Q |
| |
|
|||||||||||| ||| |||||| | ||||| ||| || || ||| ||||||| || || || ||||| |||||||||||||||| ||| ||| |
|
|
| T |
6572811 |
tgctgattattgatacttggttgtcgttgtctttgtatgaaagcaaatggttgattatttcttctttctcaccctctctaccatatatgcaagatttatc |
6572712 |
T |
|
| Q |
232 |
caccaaagatgtagttggc |
250 |
Q |
| |
|
||||| ||||| ||||||| |
|
|
| T |
6572711 |
caccagagatgcagttggc |
6572693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 35140017 - 35139943
Alignment:
| Q |
16 |
atcaaaagtttctgaaacatagacccaagctttaagttcaaaatgctcctgcatcctgtggtcgttgtacacaag |
90 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||| |||||| ||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
35140017 |
atcaaaagattcagaaacatggacccaagctttaaattcaaactgctcatgtatcctatggtcattgtaaacaag |
35139943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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