View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_132 (Length: 251)
Name: NF0784_low_132
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_132 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 35351940 - 35351719
Alignment:
| Q |
30 |
caatagcgcttttggaagtgcttcaacaagacattaaacaaaagnnnnnnntgaaacagtaatacgaaaactttgttgacataggtatttcttaccatat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
35351940 |
caatagcgcttttggaagtgcttcaacaagacattaaacaaaagaaaaaaatgaaacagtaatacaaaaactttgttgacataggtatttcttaccatat |
35351841 |
T |
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| Q |
130 |
tgaatataatagtcaagcattacctgcacatcattttgatttgtattttcatcaccaaacttgtttagctgtcctgcatctacaggtggagggttacttt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35351840 |
tgaatataatagtcaagcattacctgcacatcattttgatttgtattttcatcaccaaacttgtttagctgtcctgcatctacaggtggagggttacttt |
35351741 |
T |
|
| Q |
230 |
gctcagaggtatcctccaaaga |
251 |
Q |
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|||||||||||||||||||||| |
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| T |
35351740 |
gctcagaggtatcctccaaaga |
35351719 |
T |
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