View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_14 (Length: 518)

Name: NF0784_low_14
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_14
NF0784_low_14
[»] chr1 (15 HSPs)
chr1 (211-424)||(26444409-26444628)
chr1 (86-207)||(26444316-26444437)
chr1 (279-335)||(42501221-42501277)
chr1 (283-335)||(48431519-48431571)
chr1 (256-335)||(50771669-50771748)
chr1 (279-334)||(51584857-51584912)
chr1 (289-331)||(32404643-32404685)
chr1 (279-335)||(38868995-38869051)
chr1 (256-335)||(853898-853977)
chr1 (286-349)||(36339903-36339965)
chr1 (279-349)||(10272371-10272441)
chr1 (280-325)||(8343004-8343049)
chr1 (286-335)||(8796329-8796378)
chr1 (279-323)||(6025718-6025762)
chr1 (157-197)||(10569286-10569326)
[»] chr6 (7 HSPs)
chr6 (209-303)||(18905920-18906014)
chr6 (97-207)||(18905839-18905950)
chr6 (286-349)||(8364676-8364739)
chr6 (286-335)||(34618-34667)
chr6 (286-335)||(4948417-4948466)
chr6 (286-335)||(4955388-4955437)
chr6 (279-335)||(10617347-10617403)
[»] chr5 (14 HSPs)
chr5 (209-303)||(43522650-43522744)
chr5 (97-207)||(18131945-18132057)
chr5 (209-284)||(18131900-18131975)
chr5 (97-206)||(43522568-43522679)
chr5 (375-422)||(18131065-18131112)
chr5 (375-424)||(43522789-43522838)
chr5 (279-335)||(33667548-33667604)
chr5 (265-335)||(14749406-14749476)
chr5 (286-331)||(6859501-6859546)
chr5 (286-335)||(15489605-15489654)
chr5 (279-335)||(2713057-2713113)
chr5 (279-335)||(3775180-3775236)
chr5 (291-335)||(29922409-29922453)
chr5 (283-331)||(32516673-32516720)
[»] chr8 (17 HSPs)
chr8 (283-335)||(35643719-35643771)
chr8 (286-349)||(30198365-30198428)
chr8 (293-335)||(24558610-24558652)
chr8 (287-332)||(38178376-38178421)
chr8 (289-349)||(28169515-28169575)
chr8 (279-331)||(45512612-45512664)
chr8 (268-335)||(10080020-10080087)
chr8 (286-349)||(32931081-32931144)
chr8 (265-335)||(25985617-25985687)
chr8 (289-331)||(45419358-45419400)
chr8 (286-335)||(2216408-2216457)
chr8 (290-339)||(16994553-16994602)
chr8 (265-334)||(37826390-37826459)
chr8 (295-335)||(4011212-4011252)
chr8 (290-330)||(29709821-29709861)
chr8 (279-335)||(32043703-32043759)
chr8 (286-335)||(41444453-41444504)
[»] chr2 (6 HSPs)
chr2 (243-335)||(19235097-19235189)
chr2 (285-335)||(26670887-26670937)
chr2 (279-341)||(26784447-26784509)
chr2 (294-349)||(33287549-33287604)
chr2 (279-331)||(12141657-12141709)
chr2 (295-335)||(29548750-29548790)
[»] chr7 (10 HSPs)
chr7 (279-335)||(14593873-14593929)
chr7 (265-335)||(24549801-24549871)
chr7 (279-335)||(16013396-16013452)
chr7 (279-331)||(28628050-28628102)
chr7 (287-335)||(45601597-45601645)
chr7 (279-332)||(7220869-7220922)
chr7 (294-335)||(12966144-12966185)
chr7 (286-335)||(30814784-30814833)
chr7 (296-336)||(35713828-35713868)
chr7 (281-349)||(40830317-40830385)
[»] chr3 (5 HSPs)
chr3 (289-335)||(39600794-39600840)
chr3 (279-335)||(31261055-31261111)
chr3 (249-335)||(11581527-11581613)
chr3 (256-305)||(49841708-49841757)
chr3 (279-339)||(46146209-46146269)
[»] chr4 (7 HSPs)
chr4 (286-335)||(49987528-49987577)
chr4 (279-325)||(26356732-26356778)
chr4 (289-331)||(35690394-35690436)
chr4 (286-335)||(18966725-18966774)
chr4 (266-331)||(31961383-31961448)
chr4 (283-331)||(28351676-28351724)
chr4 (286-334)||(35555761-35555809)


Alignment Details
Target: chr1 (Bit Score: 133; Significance: 6e-69; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 211 - 424
Target Start/End: Original strand, 26444409 - 26444628
Alignment:
Q  211 tggtttgagcatgtagagatgatacttgctggttctgcagtaaaaagagtataccagatgaagtggattcaaattactagaggtagaggaagaccgacaa 310  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  26444409 tggtttgagcatgtagagatgatacttgctggttatgcagtaaaaagagtatatcagatgaagtggattcaaattactagatgtagaggaagaccgacaa 26444508  T
Q  311 aaactataagagaaattattaagaatgatattgaaattat------caaaaaccttttnnnnnnnnnnnntcttgaaattaatgagttgcatgtaaatat 404  Q
    |||||||||||||||||||||| |||||||||||||||||       |||||||||||            ||| ||||||||||||||||||||||||||    
T  26444509 aaactataagagaaattattaaaaatgatattgaaattataaaaaaaaaaaacctttttaaaaaaatagatctcgaaattaatgagttgcatgtaaatat 26444608  T
Q  405 ggtatttgatacaacattat 424  Q
    ||||||||||| ||||||||    
T  26444609 ggtatttgatataacattat 26444628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 86 - 207
Target Start/End: Original strand, 26444316 - 26444437
Alignment:
Q  86 gaataaacatgatatgactaaaaatgacaatattaaagagagttaagataacacctatattatctacaaaggatggtgaaaacttggtttaggtggtttg 185  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  26444316 gaataaacatgatatgactaaaaatgacaatattaaagagagttaagataacacctataatatctacaaaggatggtgaaaacttgttttagttggtttg 26444415  T
Q  186 agcatgtggagatgatacttgc 207  Q
    ||||||| ||||||||||||||    
T  26444416 agcatgtagagatgatacttgc 26444437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 42501221 - 42501277
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| | |||||||||||||| ||| | |||||||||||||||||||||||||||    
T  42501221 tcaaatcattagaggtagaggaaaacctagaaaaactataagagaaattattaagaa 42501277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 48431571 - 48431519
Alignment:
Q  283 attactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    ||||| ||||||||||||||||| | ||||||||||||||||| |||||||||    
T  48431571 attacaagaggtagaggaagacccaaaaaaactataagagaaactattaagaa 48431519  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 50771748 - 50771669
Alignment:
Q  256 agagtataccagatgaagtggattcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| | |||||| || ||| |||||| ||||||||||| |||||||| | |||||||||||| |||| |||||||||    
T  50771748 agagtagatcagatggaggggagtcaaatgactagaggtaggggaagacctagaaaaactataagcgaaactattaagaa 50771669  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 279 - 334
Target Start/End: Original strand, 51584857 - 51584912
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaaga 334  Q
    |||||| ||||||||||| |||||||| | ||||||||||||||||| ||||||||    
T  51584857 tcaaatcactagaggtaggggaagacctagaaaaactataagagaaactattaaga 51584912  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 331
Target Start/End: Complemental strand, 32404685 - 32404643
Alignment:
Q  289 agaggtagaggaagaccgacaaaaactataagagaaattatta 331  Q
    ||||||||||||||||| ||||||||||||||||||| |||||    
T  32404685 agaggtagaggaagacctacaaaaactataagagaaactatta 32404643  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 38868995 - 38869051
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| | |||||| ||| ||||||| | |||||||||||||||||||||||||||    
T  38868995 tcaaatcattagaggcagaagaagacctagaaaaactataagagaaattattaagaa 38869051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 853977 - 853898
Alignment:
Q  256 agagtataccagatgaagtggattcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    ||||| ||||||||||||   | |||||| |||||||| ||||||||||| | |||| ||||| |||||| |||||||||    
T  853977 agagtttaccagatgaagattagtcaaatcactagaggcagaggaagacctaaaaaatctatacgagaaactattaagaa 853898  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 349
Target Start/End: Complemental strand, 36339965 - 36339903
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattattaagaatgatattgaaatta 349  Q
    |||||||||||||||||||| | ||||||||| ||||||| ||||| ||| ||| |||||||||    
T  36339965 actagaggtagaggaagacctagaaaaactatcagagaaactattaggaaagat-ttgaaatta 36339903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 349
Target Start/End: Original strand, 10272371 - 10272441
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaatgatattgaaatta 349  Q
    |||||| ||||||||||| |||||||| | ||||  ||||||||||| ||||||||| ||| | |||||||    
T  10272371 tcaaatcactagaggtaggggaagacctagaaaacttataagagaaactattaagaaggatctagaaatta 10272441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 325
Target Start/End: Complemental strand, 8343049 - 8343004
Alignment:
Q  280 caaattactagaggtagaggaagaccgacaaaaactataagagaaa 325  Q
    ||||| ||||||| |||||||||||| | |||||||||||||||||    
T  8343049 caaatcactagagatagaggaagacctagaaaaactataagagaaa 8343004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 8796329 - 8796378
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||||| ||||||||||| | ||||||| ||||||||| |||||||||    
T  8796329 actagaggcagaggaagaccaataaaaactttaagagaaactattaagaa 8796378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 6025718 - 6025762
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagaga 323  Q
    |||||| |||||||| ||||||||||| | |||||||||||||||    
T  6025718 tcaaatcactagaggcagaggaagacctagaaaaactataagaga 6025762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 10569326 - 10569286
Alignment:
Q  157 gatggtgaaaacttggtttaggtggtttgagcatgtggaga 197  Q
    |||||||||||||||| |||||||||||| |||||| ||||    
T  10569326 gatggtgaaaacttggcttaggtggtttgggcatgtagaga 10569286  T

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Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 18905920 - 18906014
Alignment:
Q  209 ggtggtttgagcatgtagagatgatacttgctggttctgcagtaaaaagagtataccagatgaagtggattcaaattactagaggtagaggaaga 303  Q
    |||||||||||||||||||||| |||||||||| || || ||||||| |||||||||||||||||||||||||||| |  |||||||||||||||    
T  18905920 ggtggtttgagcatgtagagataatacttgctgattttgtagtaaaaggagtataccagatgaagtggattcaaataaaaagaggtagaggaaga 18906014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 18905839 - 18905950
Alignment:
Q  97 atatgactaaaaatgacaatattaaagagag--ttaagataacacctatattatctacaaaggatggtgaaaacttggtttaggtggtttgagcatgtgg 194  Q
    ||||||||| ||||||||||||| |||||||  |||| ||||||| |||| |||||| ||| ||||||| ||| |||||||||||||||||||||||| |    
T  18905839 atatgactagaaatgacaatatttaagagagagttaaaataacacatataatatctagaaaagatggtggaaa-ttggtttaggtggtttgagcatgtag 18905937  T
Q  195 agatgatacttgc 207  Q
    |||| ||||||||    
T  18905938 agataatacttgc 18905950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 8364676 - 8364739
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattattaagaatgatattgaaatta 349  Q
    |||||||| ||| ||||||| | ||||||||||||||||| ||||||||| ||| | |||||||    
T  8364676 actagaggaagatgaagacctaaaaaaactataagagaaactattaagaaagatttagaaatta 8364739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 34667 - 34618
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||||| ||||||||||| | |||||||||||||||||  ||||||||    
T  34667 actagaggcagaggaagacctagaaaaactataagagaaaccattaagaa 34618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 4948466 - 4948417
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||||||||||||||||| |||||||||| |||| ||| |||| ||||    
T  4948466 actagaggtagaggaagacctacaaaaactaaaagaaaaactattgagaa 4948417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 4955437 - 4955388
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||||||||||||||||| |||||||||| |||| ||| |||| ||||    
T  4955437 actagaggtagaggaagacctacaaaaactaaaagaaaaactattgagaa 4955388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 10617403 - 10617347
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| |||||||||||| ||| ||| | |||||||||||||||||  ||||||||    
T  10617403 tcaaatcactagaggtagaagaaaacctagaaaaactataagagaaaccattaagaa 10617347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 209 - 303
Target Start/End: Original strand, 43522650 - 43522744
Alignment:
Q  209 ggtggtttgagcatgtagagatgatacttgctggttctgcagtaaaaagagtataccagatgaagtggattcaaattactagaggtagaggaaga 303  Q
    |||||||||||||| ||||||| ||||||| || || || ||||||| |||||||||||||||||||||||||||| | ||||||||||||||||    
T  43522650 ggtggtttgagcatatagagataatacttgttgattttgtagtaaaaggagtataccagatgaagtggattcaaataaatagaggtagaggaaga 43522744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 18132057 - 18131945
Alignment:
Q  97 atatgactaaaaatgacaatattaaagagag--ttaagataacacctatattatctacaaaggatggtgaaaacttggtttaggtggtttgagcatgtgg 194  Q
    ||||||||| ||||||||||||| |||||||  |||||||||||| |||| |||||| ||| ||||||| ||| ||| |||||||||||||||||||| |    
T  18132057 atatgactagaaatgacaatatttaagagagagttaagataacacatataatatctagaaaagatggtggaaaattgatttaggtggtttgagcatgtag 18131958  T
Q  195 agatgatacttgc 207  Q
    |||| ||||||||    
T  18131957 agataatacttgc 18131945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 209 - 284
Target Start/End: Complemental strand, 18131975 - 18131900
Alignment:
Q  209 ggtggtttgagcatgtagagatgatacttgctggttctgcagtaaaaagagtataccagatgaagtggattcaaat 284  Q
    |||||||||||||||||||||| |||||||||| || || ||||||| ||||||||||||||||||||||||||||    
T  18131975 ggtggtttgagcatgtagagataatacttgctgattttgtagtaaaaggagtataccagatgaagtggattcaaat 18131900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 97 - 206
Target Start/End: Original strand, 43522568 - 43522679
Alignment:
Q  97 atatgactaaaaatgacaatattaaagag--agttaagataacacctatattatctacaaaggatggtgaaaacttggtttaggtggtttgagcatgtgg 194  Q
    ||||||||| ||||||||||||| |||||  |||||||||||||| |||| ||| || ||| ||||||| ||| ||| |||||||||||||||||| | |    
T  43522568 atatgactagaaatgacaatatttaagagagagttaagataacacatataatatatagaaaagatggtggaaaattgatttaggtggtttgagcatatag 43522667  T
Q  195 agatgatacttg 206  Q
    |||| |||||||    
T  43522668 agataatacttg 43522679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 375 - 422
Target Start/End: Complemental strand, 18131112 - 18131065
Alignment:
Q  375 tcttgaaattaatgagttgcatgtaaatatggtatttgatacaacatt 422  Q
    |||||||||| |||||||| || |||||||||||||||||||||||||    
T  18131112 tcttgaaattgatgagttgaatataaatatggtatttgatacaacatt 18131065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 424
Target Start/End: Original strand, 43522789 - 43522838
Alignment:
Q  375 tcttgaaattaatgagttgcatgtaaatatggtatttgatacaacattat 424  Q
    |||||||||| |||||||| || |||||||||||||||||||| ||||||    
T  43522789 tcttgaaattgatgagttggatataaatatggtatttgatacatcattat 43522838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 33667548 - 33667604
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| |||||| |||| |||||||| | |||||||||||||||| ||||||||||    
T  33667548 tcaaatcactagatgtaggggaagacctagaaaaactataagagaagttattaagaa 33667604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 14749406 - 14749476
Alignment:
Q  265 cagatgaagtggattcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| || ||| |||||| |||| ||| ||||||||||| | ||||||||||||||||| ||| |||||    
T  14749406 cagatggaggggagtcaaatcactaaaggcagaggaagacctagaaaaactataagagaaactatcaagaa 14749476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 6859501 - 6859546
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattatta 331  Q
    |||||||| ||||||||||| | ||||||||||||||||| |||||    
T  6859501 actagaggaagaggaagacctagaaaaactataagagaaactatta 6859546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 15489654 - 15489605
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||||| ||||||||||| | |||||| |||||||||| |||||||||    
T  15489654 actagaggcagaggaagacctagaaaaacaataagagaaactattaagaa 15489605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 2713057 - 2713113
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| |||||||  || |||||||| | ||||||||||||||||| |||||||||    
T  2713057 tcaaatcactagagtcaggggaagacctagaaaaactataagagaaactattaagaa 2713113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 3775236 - 3775180
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| |||||||| ||| ||||||| | ||||||||||||| ||| |||||||||    
T  3775236 tcaaatcactagaggcagaagaagacctagaaaaactataagataaactattaagaa 3775180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 29922409 - 29922453
Alignment:
Q  291 aggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    ||||||||||||| | | ||||||||||||||||| |||||||||    
T  29922409 aggtagaggaagatctagaaaaactataagagaaactattaagaa 29922453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 32516673 - 32516720
Alignment:
Q  283 attactagaggtagaggaagaccgacaaaaactataagagaaattatta 331  Q
    ||||| ||||||||||||||||| | ||||||||||||||||| |||||    
T  32516673 attacaagaggtagaggaagaccta-aaaaactataagagaaactatta 32516720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 35643771 - 35643719
Alignment:
Q  283 attactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    ||||||||||| ||||||||||| | |||||||||||||||||||||||||||    
T  35643771 attactagaggcagaggaagacctagaaaaactataagagaaattattaagaa 35643719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 286 - 349
Target Start/End: Complemental strand, 30198428 - 30198365
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattattaagaatgatattgaaatta 349  Q
    |||||||| ||||| ||||  | ||||||||||||||||||||||||||| |||||||| ||||    
T  30198428 actagaggcagaggtagacttagaaaaactataagagaaattattaagaaagatattgagatta 30198365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 293 - 335
Target Start/End: Original strand, 24558610 - 24558652
Alignment:
Q  293 gtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    ||||||||||||||| |||||| ||||||||||||||||||||    
T  24558610 gtagaggaagaccgagaaaaacaataagagaaattattaagaa 24558652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 38178421 - 38178376
Alignment:
Q  287 ctagaggtagaggaagaccgacaaaaactataagagaaattattaa 332  Q
    ||||||||||||||||||| | ||||||||||||||||| ||||||    
T  38178421 ctagaggtagaggaagacctagaaaaactataagagaaactattaa 38178376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 349
Target Start/End: Original strand, 28169515 - 28169575
Alignment:
Q  289 agaggtagaggaagaccgacaaaaactataagagaaattattaagaatgatattgaaatta 349  Q
    ||||||||||||||||| | ||||||||||||||||| ||||| ||| ||| |||| ||||    
T  28169515 agaggtagaggaagacctaaaaaaactataagagaaactattaggaaagattttgagatta 28169575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 45512664 - 45512612
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattatta 331  Q
    |||||| |||||||| ||||||||||| | ||||||||||||||||| |||||    
T  45512664 tcaaatcactagaggcagaggaagacctagaaaaactataagagaaactatta 45512612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 10080087 - 10080020
Alignment:
Q  268 atgaagtggattcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| ||| |||||| |||||||||||||||||||| | | ||||||||||| ||| | |||||||    
T  10080087 atgaaggggagtcaaatcactagaggtagaggaagacctagagaaactataagaaaaactgttaagaa 10080020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 32931081 - 32931144
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattattaagaatgatattgaaatta 349  Q
    |||||||| ||||||||||| | ||||||||| ||||||| ||||| ||| ||| |||||||||    
T  32931081 actagaggcagaggaagacctaaaaaaactatcagagaaactattaggaaagattttgaaatta 32931144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 25985617 - 25985687
Alignment:
Q  265 cagatgaagtggattcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| || ||| |||||| |||||||||||||||||||| | |||||||| | | |||| |||||||||    
T  25985617 cagatgtaggggagtcaaatcactagaggtagaggaagacctagaaaaactaaatgggaaactattaagaa 25985687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 331
Target Start/End: Original strand, 45419358 - 45419400
Alignment:
Q  289 agaggtagaggaagaccgacaaaaactataagagaaattatta 331  Q
    ||||||||||||||||| | ||||||||||||||||| |||||    
T  45419358 agaggtagaggaagacctagaaaaactataagagaaactatta 45419400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 2216408 - 2216457
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||||||||||||||||| | |||||  |||||||||| |||||||||    
T  2216408 actagaggtagaggaagacctagaaaaaacataagagaaactattaagaa 2216457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 16994602 - 16994553
Alignment:
Q  290 gaggtagaggaagaccgacaaaaactataagagaaattattaagaatgat 339  Q
    |||| ||||||||||| | |||||||||| |||||| |||||||||||||    
T  16994602 gaggaagaggaagacctagaaaaactatatgagaaactattaagaatgat 16994553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 334
Target Start/End: Original strand, 37826390 - 37826459
Alignment:
Q  265 cagatgaagtggattcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaaga 334  Q
    ||||||||| | | |||||| |||||||| ||||| ||||| | | ||||||||||||||| ||||||||    
T  37826390 cagatgaagagtagtcaaatcactagaggcagagggagacctagataaactataagagaaactattaaga 37826459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 335
Target Start/End: Original strand, 4011212 - 4011252
Alignment:
Q  295 agaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    ||||||||||| | ||||||||||||||||| |||||||||    
T  4011212 agaggaagacctagaaaaactataagagaaactattaagaa 4011252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 29709821 - 29709861
Alignment:
Q  290 gaggtagaggaagaccgacaaaaactataagagaaattatt 330  Q
    |||||||||||||||| | ||||||||||||||||| ||||    
T  29709821 gaggtagaggaagacctagaaaaactataagagaaactatt 29709861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 32043703 - 32043759
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| ||||||||||| |||||||| | ||||||||| ||||||| ||| |||||    
T  32043703 tcaaatcactagaggtaggggaagacctaaaaaaactattagagaaactatcaagaa 32043759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 41444504 - 41444453
Alignment:
Q  286 actagaggtagaggaagacc--gacaaaaactataagagaaattattaagaa 335  Q
    |||||||| |||||||||||  || ||||||||||||||||| |||||||||    
T  41444504 actagaggcagaggaagacctagaaaaaaactataagagaaactattaagaa 41444453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 335
Target Start/End: Complemental strand, 19235189 - 19235097
Alignment:
Q  243 ttctgcagtaaaaagagtataccagatgaagtggattcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    ||||| |||||| |||||| | |||||| || ||| |||||| ||||||| |||||||||||| | ||||||||||||||||| |||| ||||    
T  19235189 ttctgtagtaaagagagtagatcagatggaggggagtcaaatcactagagatagaggaagacctagaaaaactataagagaaactattgagaa 19235097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 285 - 335
Target Start/End: Original strand, 26670887 - 26670937
Alignment:
Q  285 tactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    ||||||||||||||||||||| ||||||||||||| ||||| |||||||||    
T  26670887 tactagaggtagaggaagacctacaaaaactataaaagaaactattaagaa 26670937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 341
Target Start/End: Complemental strand, 26784509 - 26784447
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaatgatat 341  Q
    |||||| |||||||| |||| |||||| | ||||||||||||||||| ||||||||| |||||    
T  26784509 tcaaatcactagaggcagagaaagacctagaaaaactataagagaaactattaagaaagatat 26784447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 33287549 - 33287604
Alignment:
Q  294 tagaggaagaccgacaaaaactataagagaaattattaagaatgatattgaaatta 349  Q
    |||||||||||| | ||||||||||||||||| ||||||||| ||| | |||||||    
T  33287549 tagaggaagacctagaaaaactataagagaaactattaagaaagatctagaaatta 33287604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 12141657 - 12141709
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattatta 331  Q
    ||||||||| ||||||||||||||||| | |||| ||||| |||||| |||||    
T  12141657 tcaaattacaagaggtagaggaagacctagaaaagctataggagaaactatta 12141709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 295 - 335
Target Start/End: Complemental strand, 29548790 - 29548750
Alignment:
Q  295 agaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||||||||   |||||||||||||||||||||||||||    
T  29548790 agaggaagacctgaaaaaactataagagaaattattaagaa 29548750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 14593873 - 14593929
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| ||||||||||| |||||||| | ||||||||||||||||| |||||||||    
T  14593873 tcaaatcactagaggtaggggaagacctagaaaaactataagagaaactattaagaa 14593929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 335
Target Start/End: Complemental strand, 24549871 - 24549801
Alignment:
Q  265 cagatgaagtggattcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| || |||||||||| |||||||||||| |||||||   || |||||||||||||| |||||||||    
T  24549871 cagatggaggggattcaaatcactagaggtagaagaagacctgaaagaactataagagaaactattaagaa 24549801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 335
Target Start/End: Original strand, 16013396 - 16013452
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| || |||||||| |||||||| | ||||||||||||||||| |||||||||    
T  16013396 tcaaatcaccagaggtaggggaagacctagaaaaactataagagaaactattaagaa 16013452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 28628102 - 28628050
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattatta 331  Q
    |||||| || ||||||||||||||||| | ||||||||||||||||| |||||    
T  28628102 tcaaatcacaagaggtagaggaagacctagaaaaactataagagaaactatta 28628050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 335
Target Start/End: Original strand, 45601597 - 45601645
Alignment:
Q  287 ctagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    ||||||||||||||||||| | |||||||||||||||||  ||||||||    
T  45601597 ctagaggtagaggaagacctagaaaaactataagagaaaccattaagaa 45601645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 7220869 - 7220922
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaa 332  Q
    ||||||||||||||| |||| |||||| | |||||| ||||| |||||||||||    
T  7220869 tcaaattactagaggcagagtaagacctataaaaaccataagtgaaattattaa 7220922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 335
Target Start/End: Original strand, 12966144 - 12966185
Alignment:
Q  294 tagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||||||||| | ||||||||||||||||| |||||||||    
T  12966144 tagaggaagacctagaaaaactataagagaaactattaagaa 12966185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 30814833 - 30814784
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||||| ||||||||||| | ||| ||||||||||||| |||||||||    
T  30814833 actagaggcagaggaagacctagaaacactataagagaaactattaagaa 30814784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 336
Target Start/End: Original strand, 35713828 - 35713868
Alignment:
Q  296 gaggaagaccgacaaaaactataagagaaattattaagaat 336  Q
    |||||||||| | ||||||||||| ||||||||||||||||    
T  35713828 gaggaagacctagaaaaactataacagaaattattaagaat 35713868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 281 - 349
Target Start/End: Original strand, 40830317 - 40830385
Alignment:
Q  281 aaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaatgatattgaaatta 349  Q
    |||| |||||||  ||||||||||| | |||| |||||||||||| ||||||||| ||| | |||||||    
T  40830317 aaatcactagagacagaggaagacctagaaaatctataagagaaactattaagaaggatctagaaatta 40830385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 289 - 335
Target Start/End: Complemental strand, 39600840 - 39600794
Alignment:
Q  289 agaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    ||||||||||||||||| | ||||||||||||||||| |||||||||    
T  39600840 agaggtagaggaagacctagaaaaactataagagaaactattaagaa 39600794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 31261111 - 31261055
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||| |||||||| ||||||||||| | ||||||||||||||||| ||| |||||    
T  31261111 tcaaatcactagaggcagaggaagacctagaaaaactataagagaaactatcaagaa 31261055  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 335
Target Start/End: Original strand, 11581527 - 11581613
Alignment:
Q  249 agtaaaaagagtataccagatgaagtggattcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    ||||| ||||||| | |||||| ||  || |||||| ||||||||||   ||||||| | ||||||||||||||||| |||||||||    
T  11581527 agtaagaagagtacatcagatgtaggtgagtcaaatcactagaggtatgagaagacctagaaaaactataagagaaactattaagaa 11581613  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 49841708 - 49841757
Alignment:
Q  256 agagtataccagatgaagtggattcaaattactagaggtagaggaagacc 305  Q
    |||||| | ||||||||| | | |||||||||||||||||||||||||||    
T  49841708 agagtaaatcagatgaagggtagtcaaattactagaggtagaggaagacc 49841757  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 46146209 - 46146269
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaattattaagaatgat 339  Q
    |||||| |||||||| | ||||||| | | ||||||||||| ||||| |||||||||||||    
T  46146209 tcaaatcactagaggcataggaagatctagaaaaactataaaagaaactattaagaatgat 46146269  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 49987528 - 49987577
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||||| ||||||||||| | ||||||||||||||||| |||||||||    
T  49987528 actagaggcagaggaagacctagaaaaactataagagaaactattaagaa 49987577  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 325
Target Start/End: Original strand, 26356732 - 26356778
Alignment:
Q  279 tcaaattactagaggtagaggaagaccgacaaaaactataagagaaa 325  Q
    |||||| ||||||||||| |||||||| | |||||||||||||||||    
T  26356732 tcaaatcactagaggtaggggaagacctagaaaaactataagagaaa 26356778  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 289 - 331
Target Start/End: Original strand, 35690394 - 35690436
Alignment:
Q  289 agaggtagaggaagaccgacaaaaactataagagaaattatta 331  Q
    ||||||||||||||||| | ||||||||||||||||| |||||    
T  35690394 agaggtagaggaagacctagaaaaactataagagaaactatta 35690436  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 18966725 - 18966774
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattattaagaa 335  Q
    |||||||||||| ||||||| | || |||||||||||||| |||||||||    
T  18966725 actagaggtagaagaagacctaaaacaactataagagaaactattaagaa 18966774  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 331
Target Start/End: Complemental strand, 31961448 - 31961383
Alignment:
Q  266 agatgaagtggattcaaattactagaggtagaggaagaccgacaaaaactataagagaaattatta 331  Q
    ||||| || ||| |||||| ||||||||||| || ||||| | ||||||||||||||||| |||||    
T  31961448 agatggagaggagtcaaatcactagaggtaggggtagacctagaaaaactataagagaaactatta 31961383  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 28351676 - 28351724
Alignment:
Q  283 attactagaggtagaggaagaccgacaaaaactataagagaaattatta 331  Q
    ||||| |||||||||| |||||| | ||||||||||||||||| |||||    
T  28351676 attacaagaggtagagaaagacctagaaaaactataagagaaactatta 28351724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 334
Target Start/End: Complemental strand, 35555809 - 35555761
Alignment:
Q  286 actagaggtagaggaagaccgacaaaaactataagagaaattattaaga 334  Q
    ||||||||||| || ||||| | ||||||||||||||||| ||||||||    
T  35555809 actagaggtaggggtagacctagaaaaactataagagaaactattaaga 35555761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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