View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_143 (Length: 236)
Name: NF0784_low_143
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_143 |
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Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 41706927 - 41706855
Alignment:
| Q |
134 |
agatgaagttaaataagtgatatacttgcggtggagcaatgcatggttaaggcaggatatgatgaggcaatat |
206 |
Q |
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| T |
41706927 |
agatgaagttaaataagtgatatacttgcggtggagcaatgcatggttaaggcaggatatgatgaggcaatat |
41706855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 26217522 - 26217450
Alignment:
| Q |
134 |
agatgaagttaaataagtgatatacttgcggtggagcaatgcatggttaaggcaggatatgatgaggcaatat |
206 |
Q |
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| T |
26217522 |
agatgaagttaagtaagtgatatacttgcggtggagcaatgcatggttaaggcaggatatgatgaggcaatat |
26217450 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 44185402 - 44185456
Alignment:
| Q |
1 |
aaccgtagctatactcttgatgaaatttcgttttctattcttgtcaaatttcccc |
55 |
Q |
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| T |
44185402 |
aaccgtagctatattcctgatgaaatttcgttttctattctttccaaattacccc |
44185456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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