View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_148 (Length: 224)
Name: NF0784_low_148
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_148 |
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Alignment Details
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 29 - 178
Target Start/End: Original strand, 31705797 - 31705947
Alignment:
| Q |
29 |
ttattattcttctctactaccacttgagtaaccaaaattaataagaacannnnnnnnnnaa--aataatactgattaatggagtgagtagtaaataaatg |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||||||||| |
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| T |
31705797 |
ttattattcttctctactaccacttgagtaaccaaaattaataagaacattttcttttttataaataatactgattaatggagcgagtagtaaataaatg |
31705896 |
T |
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| Q |
127 |
aaagaactattaatccaaaaacacattccaccttggagggagtatattgttg |
178 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||||||||| |
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| T |
31705897 |
aaagaactattaatcc-aaaacacattccacctcggagggagtatattgttg |
31705947 |
T |
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