View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_162 (Length: 213)
Name: NF0784_low_162
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_162 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 14173411 - 14173625
Alignment:
| Q |
1 |
actgcatcctcaaggtgaacactgtttctcttgtaatacagctccttgatgtccttcagatctttctcggctcttgtcacgaccacacgagtcagtccat |
100 |
Q |
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| T |
14173411 |
actgcatcctcaaggtgaacactgtttctcttataatacagctctttgatgtccttcagatctttctcggctcttgtcacgaccacacgagtcagtccat |
14173510 |
T |
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| Q |
101 |
cctcatcggttccaacccttttcaacgcaccgcgcagaatctaaacatcatggt--aaaaaacaaatcaaggataatcatcgattaaaatatgttacaag |
198 |
Q |
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| T |
14173511 |
cctcatcggttccaacccttttcaacgcaccgcgtagaatctaaacatcatggtaaaaaaaaaaaatcaaggataatcatcgattaaaatatgttacaag |
14173610 |
T |
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| Q |
199 |
tttatgtgtgggacg |
213 |
Q |
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|||||||||| |||| |
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| T |
14173611 |
tttatgtgtgagacg |
14173625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 14151743 - 14151878
Alignment:
| Q |
1 |
actgcatcctcaaggtgaacactgtttctcttgtaatacagctccttgatgtccttcagatctttctcggctcttgtcacgaccacacgagtcagtccat |
100 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| || ||||| | |||||||| || ||||||| |
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| T |
14151743 |
actgtatcctcaaggtgaacactatttctcttgtaatacagctctttgatgtccttcaagtctttctccgcccttgtgatcaccacacgggttagtccat |
14151842 |
T |
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| Q |
101 |
cctcatcggttccaacccttttcaacgcaccgcgca |
136 |
Q |
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| T |
14151843 |
cctcatcggttccaatccttttcagcgcaccacgca |
14151878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 5181707 - 5181597
Alignment:
| Q |
5 |
catcctcaaggtgaacactgtttctcttgtaatacagctccttgatgtccttcagatctttctcggctcttgtcacgaccacacgagtcagtccatcctc |
104 |
Q |
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|||| ||||| |||||||||||||||||||| |||||||| ||||||||| ||| ||| || || || ||||| || | ||| || |||||||||| || |
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| T |
5181707 |
catcttcaagatgaacactgtttctcttgtagtacagctctttgatgtccctcaaatccttttcagcccttgtgacaatcacgcggctcagtccatcttc |
5181608 |
T |
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| Q |
105 |
atcggttccaa |
115 |
Q |
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| T |
5181607 |
atcggttccaa |
5181597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 5217270 - 5217210
Alignment:
| Q |
1 |
actgcatcctcaaggtgaacactgtttctcttgtaatacagctccttgatgtccttcagat |
61 |
Q |
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|||||||| ||||| |||||||||||||||||||| ||||||| ||||||||| |||||| |
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| T |
5217270 |
actgcatcttcaagatgaacactgtttctcttgtaggacagctctttgatgtccctcagat |
5217210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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