View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_19 (Length: 501)
Name: NF0784_low_19
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_19 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 218 - 501
Target Start/End: Original strand, 36733450 - 36733733
Alignment:
| Q |
218 |
agttttttccttcttatatac----gatacaattcagcagcgtaaccaacatattttcaattacttactacaacnnnnnnnnnnnggttacaataacatg |
313 |
Q |
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| T |
36733450 |
agttttttccttcttatatacatacgatacaattcagcagcgtaaccaacatattttcaattacttactacta----aaaaaaaaggttacaataacatg |
36733545 |
T |
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| Q |
314 |
gttgattaccaaggttacatcttacttttcatcatatggctagtatcaacaatttttgtaaaagccatactcacaagaaaatacaagaaatcgaagttac |
413 |
Q |
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| T |
36733546 |
gttgattaccaaggttacatcttacttttcatcatatggctagtatcaacaatttttgtaaaagccatactcacaagaaaatacaagaaatcgaagttac |
36733645 |
T |
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| Q |
414 |
ctccaagtccattatctttaccaatcattggacatcttcaccttattggttcaatacctcaccaaggacttcataaactttcaacaaa |
501 |
Q |
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| T |
36733646 |
ctccaagtccattatctttaccaatcattggacatcttcaccttattggttcaatacctcaccaaggacttcacaaactttcaacaaa |
36733733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 36733286 - 36733429
Alignment:
| Q |
11 |
cacagacattcggtgacattttatattcttcctagtttggaatcagtcatacgttttaagaatatgttgccgtccttggccttcctnnnnnnnnttgaga |
110 |
Q |
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| T |
36733286 |
cacagacattcggtgacattttatattcttcctagtttggaatcagtcatacgttttaagaatatgttgccgtccttggccttcctaaaaaaacttgaga |
36733385 |
T |
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| Q |
111 |
gcaacacataatcgtccttttccaaatcaaataacgaatatgat |
154 |
Q |
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| T |
36733386 |
gcaacacataatcgtccttttccaaatcaaataacgaatatgat |
36733429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 36733417 - 36733450
Alignment:
| Q |
170 |
taacgaatatgatcaaacacaaactacaatataa |
203 |
Q |
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| T |
36733417 |
taacgaatatgatcaaacacaaactacaatataa |
36733450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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