View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_20 (Length: 484)
Name: NF0784_low_20
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_20 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 76 - 484
Target Start/End: Original strand, 28606382 - 28606790
Alignment:
| Q |
76 |
ttttgtttacaatttaacattacgttggtcactttgattcaattaggagcacactcggttggaagagtacattgcacgaatttggtccacagactatacc |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
28606382 |
ttttgtttacaatttaacattacgttggtcactttgattcaattaggagcacactcggttggaagagtacattgcatgaatttggtccacagactatacc |
28606481 |
T |
|
| Q |
176 |
ccacagtggatccaacgttagatactacacatgctgcctacctaaaacgtaggtgcccaacaccaaatccagatccaaaagctgtccaatatgtgaggaa |
275 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28606482 |
ccacagtggatccaacgttagatcctacacatgctgcctacctaaaacgtaggtgcccaacaccaaatccagatccaaaagctgtccaatatgtgaggaa |
28606581 |
T |
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| Q |
276 |
tgatctaaaaacaccaatgataattgacaacaactactacaaaaacatcttgcaacataagggtcttctaactgtggatgaagaactagccactgatcca |
375 |
Q |
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| T |
28606582 |
tgatctaaaaacaccaatgataattgacaacaactactacaaaaacatcttgcaacataagggtcttctaacagtggatgaagaactagctactgatcca |
28606681 |
T |
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| Q |
376 |
agaacatcaccttatgtgaaaaagatggcagctgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcagagaataatcctctta |
475 |
Q |
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| T |
28606682 |
agaacatcaccttatgtgaaaaaaatggcagctgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcagagaataatcctctta |
28606781 |
T |
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| Q |
476 |
ctggagatc |
484 |
Q |
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| T |
28606782 |
ttggagatc |
28606790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 101 - 484
Target Start/End: Original strand, 28636192 - 28636575
Alignment:
| Q |
101 |
tggtcactttgattcaattaggagcacactcggttggaagagtacattgcacgaatttggtccacagactataccccacagtggatccaacgttagatac |
200 |
Q |
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| T |
28636192 |
tggtcactttgattaaatcaggagcacactcagttggaagagtacattgcatgaatttggtccacagactataccccacagtggatccaacgttagatcc |
28636291 |
T |
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| Q |
201 |
tacacatgctgcctacctaaaacgtaggtgcccaacaccaaatccagatccaaaagctgtccaatatgtgaggaatgatctaaaaacaccaatgataatt |
300 |
Q |
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| T |
28636292 |
tacacatgctacctacctaaaacgtaggtgcccaacaccaaatccagatccaaaagctgtccaatatgtgaggaatgatctaaaaacaccaatgataatt |
28636391 |
T |
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| Q |
301 |
gacaacaactactacaaaaacatcttgcaacataagggtcttctaactgtggatgaagaactagccactgatccaagaacatcaccttatgtgaaaaaga |
400 |
Q |
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| T |
28636392 |
gacaacaactactacaaaaacatcttgcaacataagggtcttctaactgtggatgaagaattagccactgatccaagaacatcaccttatgtgaaaaaaa |
28636491 |
T |
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| Q |
401 |
tggcagctgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcagagaataatcctcttactggagatc |
484 |
Q |
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| T |
28636492 |
tggcagctgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcagagaataatcctcttattggagatc |
28636575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 100 - 484
Target Start/End: Original strand, 28663761 - 28664145
Alignment:
| Q |
100 |
ttggtcactttgattcaattaggagcacactcggttggaagagtacattgcacgaatttggtccacagactataccccacagtggatccaacgttagata |
199 |
Q |
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||||||||||||||||||| ||||| |||||| || |||||||||||||||| |||| ||||||| |||||||||||||| ||||| |||| | |||| |
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| T |
28663761 |
ttggtcactttgattcaatcaggaggacactcagtgggaagagtacattgcatgaatatggtccatagactataccccacggtggacccaaagctagacc |
28663860 |
T |
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| Q |
200 |
ctacacatgctgcctacctaaaacgtaggtgcccaacaccaaatccagatccaaaagctgtccaatatgtgaggaatgatctaaaaacaccaatgataat |
299 |
Q |
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| ||| |||||||||| ||||||| ||| |||||||||||||||||||||||||| ||||| | ||||| || |||||| |||||||||||||||||| |
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| T |
28663861 |
ccacatatgctgcctatctaaaacttagatgcccaacaccaaatccagatccaaatgctgttctatatgcaagaaatgatagaaaaacaccaatgataat |
28663960 |
T |
|
| Q |
300 |
tgacaacaactactacaaaaacatcttgcaacataagggtcttctaactgtggatgaagaactagccactgatccaagaacatcaccttatgtgaaaaag |
399 |
Q |
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| T |
28663961 |
tgacaacaactactacaaaaacatcttgcaacataagggtcttctaacagtggatgaagaactagctactgatccaagaacatcaccttatgtgaaaaaa |
28664060 |
T |
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| Q |
400 |
atggcagctgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcagagaataatcctcttactggagatc |
484 |
Q |
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| T |
28664061 |
atggcagctgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcggagaataatcctcttaccggagatc |
28664145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 100 - 484
Target Start/End: Original strand, 28656685 - 28657069
Alignment:
| Q |
100 |
ttggtcactttgattcaattaggagcacactcggttggaagagtacattgcacgaatttggtccacagactataccccacagtggatccaacgttagata |
199 |
Q |
| |
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||||||||| ||||| ||| ||||||||| || || ||||||||||| |||| ||| ||||||||||||||||||| | |||||| |||||| |||| |
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| T |
28656685 |
ttggtcactatgattgaatcaggagcacattcagtgggaagagtacactgcataaatatggtccacagactataccctatagtggacccaacgctagacc |
28656784 |
T |
|
| Q |
200 |
ctacacatgctgcctacctaaaacgtaggtgcccaacaccaaatccagatccaaaagctgtccaatatgtgaggaatgatctaaaaacaccaatgataat |
299 |
Q |
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||||| ||| || ||||||||||||||| || |||| |||||| ||| | ||||||||||||||||||| ||||||||||||||||| ||| ||||||| |
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| T |
28656785 |
ctacatatgttgtctacctaaaacgtagatgtccaaaaccaaacccaaaggcaaaagctgtccaatatgtaaggaatgatctaaaaactccattgataat |
28656884 |
T |
|
| Q |
300 |
tgacaacaactactacaaaaacatcttgcaacataagggtcttctaactgtggatgaagaactagccactgatccaagaacatcaccttatgtgaaaaag |
399 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||| |
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| T |
28656885 |
tgacaacaactactacaagaacattttgcaacataagggtcttctaactgtggatgaagaactagccactgacccaataacatcaccttatgtacaaaaa |
28656984 |
T |
|
| Q |
400 |
atggcagctgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcagagaataatcctcttactggagatc |
484 |
Q |
| |
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||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
28656985 |
atggcagatgataatggttacttcaatgaccaattctcaagggctgttcttttgttatcagagaataatcctcttattggagatc |
28657069 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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