View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_21 (Length: 474)
Name: NF0784_low_21
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 29 - 465
Target Start/End: Original strand, 2617646 - 2618080
Alignment:
| Q |
29 |
aaaagttaccgagtatttctagttacatattaccaaaacttaaaatgggaatttgtatggtaatctaattttgtattgtatttgcatttagtcattaacg |
128 |
Q |
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| T |
2617646 |
aaaagttaccgagtatttctagttacatattaccaaaacttaaaatgggaatttgtatggtaatctaattttgtattgtatttgcatttagtcattaacg |
2617745 |
T |
|
| Q |
129 |
acaagataagtnnnnnnnnnnnnnngccaaattgaagactaacttatttgtagatgatgatgagttgtttagtcattgggatcaatagaaaacacaagtt |
228 |
Q |
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| T |
2617746 |
acaagataagtaaaaaaaaaaaaa-gccaaattgaagactaacttatttgtagatgatgatgagttgtttagtcattgggatcaatagaaaacacaagtt |
2617844 |
T |
|
| Q |
229 |
aacctactcaaaatgtagaaatagatacccaatggttttattcatttgctatttatggttttaatgtagccccacgaaagcccgacattaaaatattaga |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2617845 |
aacctactcaaaatgtagaaatagatacccaatggttt-attcatttgctatttatggttttaatgtagccccacgaaagcccgacattaaaatattaga |
2617943 |
T |
|
| Q |
329 |
aatttagactttttcatagattggaaatttagacgtttctttaacaaattgtgttgtacaagtactagtagattatctatcaaattcattcattaatttc |
428 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2617944 |
aatttagactttttcatagattggaaatttagacgtttctttaacaaattgtgttgtacaagtactagtagattatctatcaaattcattcattaatttc |
2618043 |
T |
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| Q |
429 |
attcaaccattgatactccaattatatatagaataat |
465 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2618044 |
attcaaccattgatactccaattatatatagaataat |
2618080 |
T |
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