View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_22 (Length: 463)
Name: NF0784_low_22
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 4 - 257
Target Start/End: Original strand, 33836161 - 33836413
Alignment:
| Q |
4 |
ggagaagcaaaggtgtgttatgatgcaataaatacaagatttggtctactttatatttgtactcaccaaaaactcttgatttacttattaagaagcgaaa |
103 |
Q |
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| T |
33836161 |
ggagaatcaaaggtgtgttatgatgctataaatacaagatttggtctactttatatt-gtactcaccaaaaactcttgatttacttattaagaagcgaaa |
33836259 |
T |
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| Q |
104 |
tttcaaagcatgcaattagacaaagaaagacctgcctattatatacaaaaggtaatttacaatcgtatcctcgagtgtgcaactccccctcatttttgtt |
203 |
Q |
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| T |
33836260 |
tttcatagcatgcaattagacaaagaaagacctgcctattatatacaaaaggtaatttacaatcgtatcctcgagtgtgcaactccccctcatttttgtt |
33836359 |
T |
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| Q |
204 |
gttgnnnnnnntggtagatattagattaaacaaataaaaatacaacaccctaat |
257 |
Q |
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| T |
33836360 |
gttgaaaaaaatggtagatattagattaaacaaataaaaatacaacaccctaat |
33836413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 258 - 436
Target Start/End: Original strand, 33836467 - 33836644
Alignment:
| Q |
258 |
ttaagtagaagagattttagaaatcaatttcattttcttttgcacacctgttatnnnnnnnntcaattgaagaaaatgtactagctagggagaagccggc |
357 |
Q |
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| T |
33836467 |
ttaagtagaagagattttagaaatcaatttcattttcttttgcacacctgtt-tttaaaaaatcaattgaagaaaatgtactagctagggagaagccggc |
33836565 |
T |
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| Q |
358 |
aagataggtatagaggtgctaaaaaatcaaaccatggttgaatttatgcttcaacaaagttgcttaaagaatgaaaatg |
436 |
Q |
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| T |
33836566 |
aagataggtatagaggtgctaaaaaatcaaaccatggttgaacttatgcttcaacaaagttgcttaaagaatgaaaatg |
33836644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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