View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_26 (Length: 454)
Name: NF0784_low_26
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 71 - 362
Target Start/End: Original strand, 37648152 - 37648443
Alignment:
| Q |
71 |
ccaacaatataaacatttatgtcccctctaaggctgatgccttcatgagtagatttgtgaaccccactcataagcataagaaggattgctcgcttaatat |
170 |
Q |
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| T |
37648152 |
ccaacaatacaaacatttatgtcccctctaaggctgatgccttcatgagtagatttgtgaaccccactcataagcataagaaggattgctcgcttaatat |
37648251 |
T |
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| Q |
171 |
cttgatgaccaaaaatagttggagctacactttcaacaagcttggtgaagaaatctggagtgttcctcattcgttgaacttcatccagttcctgaggctg |
270 |
Q |
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| T |
37648252 |
cttgatgaccaaaaatagttggagctacactttcaacaagcttggtgaagaaatctggagtgttcctcattcgttgaacttcatccagttcctgaggctg |
37648351 |
T |
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| Q |
271 |
ttaaatcaaccagtaaaatatacagtattgatcattttctctcgtatattacagaaatttgaccgagaacgtcatgtatgtgtgcacagaac |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37648352 |
ttaaatcaaccagtaaaatatacagtattgatcattttctctcgtatattacagaaatttgaccgagaacatcatgtatgtgtgcacagaac |
37648443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 67 - 264
Target Start/End: Original strand, 14761315 - 14761512
Alignment:
| Q |
67 |
atctccaacaatataaacatttatgtcccctctaaggctgatgccttcatgagtagatttgtgaaccccactcataagcataagaaggattgctcgctta |
166 |
Q |
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|||||| |||||| | ||||| |||||||||| ||| |||||||||||||| || |||||| || |||| || |||||||||||||||||||||||| |
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| T |
14761315 |
atctcctacaatacagacattgatgtcccctccgaggttgatgccttcatgaataagtttgtggacaccacccacaagcataagaaggattgctcgcttt |
14761414 |
T |
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| Q |
167 |
atatcttgatgaccaaaaatagttggagctacactttcaacaagcttggtgaagaaatctggagtgttcctcattcgttgaacttcatccagttcctg |
264 |
Q |
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| T |
14761415 |
atttctcgatgaccaaaaatcgttggtgcaacgctgtcaacaagtttatggaagaaattgggagtgttcctcatccgttcaacttcatccagttcctg |
14761512 |
T |
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