View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_28 (Length: 448)
Name: NF0784_low_28
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 30 - 435
Target Start/End: Original strand, 2928771 - 2929177
Alignment:
| Q |
30 |
gtcaagagtcacgatgaatccgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaa-gtcataaaat |
128 |
Q |
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|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2928771 |
gtcaagagtcacaatgaattcgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaaagtcataaaat |
2928870 |
T |
|
| Q |
129 |
acctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattgggaaaacatccgacag |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928871 |
acctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattgggaaaacatccgacag |
2928970 |
T |
|
| Q |
229 |
acatattagttnnnnnnnctaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctctcag |
328 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2928971 |
acatattagttaaaaaaactaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctctcag |
2929070 |
T |
|
| Q |
329 |
caatgcatcaataatattgttgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttca |
428 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2929071 |
caatgcatcaataatattattgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttca |
2929170 |
T |
|
| Q |
429 |
aagccct |
435 |
Q |
| |
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||||||| |
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| T |
2929171 |
aagccct |
2929177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 31 - 435
Target Start/End: Complemental strand, 2310265 - 2309867
Alignment:
| Q |
31 |
tcaagagtcacgatgaatccgcaatcgcggccacaatttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaagtcataaaatac |
130 |
Q |
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|
|||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2310265 |
tcaagagttacaatgaatccgcaatcgcggccgcaatttaaaaccaggtagtagtttactataaaaacaaagagttagacaaaacaaaatcataaaatac |
2310166 |
T |
|
| Q |
131 |
ctcatgtgcaattatagttgctttctctgcatcacttggaaaatgcctaatcaaatcccagcttagaactatcttcccattgggaaaacatccgacagac |
230 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||||||||| || ||| |||||||||||||||| ||||||||||||| | ||||||| | |||| |
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| T |
2310165 |
ctcacgtgcaattaaggttgctttctctgcatcacttggaaaaggcttaaccaaatcccagcttagacctatcttcccattagcaaaacatgtgccagat |
2310066 |
T |
|
| Q |
231 |
atattagttnnnnnnnctaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctctcagca |
330 |
Q |
| |
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|||| || | |||||| |||||||||||||||||||||||||||||| || | ||||||| |||||||||| ||||| ||||| ||| |
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|
| T |
2310065 |
atataaggtaaaaaaactaccacaacctcccaatttaatccatccaaatgtgacat------attagattcagggctcattttctttctttctctttgca |
2309972 |
T |
|
| Q |
331 |
atgcatcaataatattgttgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattcttcaaa |
430 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2309971 |
atgcatcaattatattattgagaatctttgtatgccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcaaa |
2309872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 167
Target Start/End: Original strand, 21959878 - 21959920
Alignment:
| Q |
125 |
aaatacctcatgtgcaattatagttgctttctctgcatcactt |
167 |
Q |
| |
|
||||||||||||| |||| ||||||||| |||||||||||||| |
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|
| T |
21959878 |
aaatacctcatgtccaataatagttgctatctctgcatcactt |
21959920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 167
Target Start/End: Complemental strand, 904889 - 904847
Alignment:
| Q |
125 |
aaatacctcatgtgcaattatagttgctttctctgcatcactt |
167 |
Q |
| |
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||||||||||||| |||| ||||||||| |||||||||||||| |
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|
| T |
904889 |
aaatacctcatgtccaataatagttgctatctctgcatcactt |
904847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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