View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_30 (Length: 440)
Name: NF0784_low_30
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_30 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 7 - 440
Target Start/End: Complemental strand, 43440183 - 43439750
Alignment:
| Q |
7 |
ggagcagagaggaaaaacaaaggaagctcaagggaacgcatgcctacggcctaccaatgcaaaatacaggatcaatacaccactcatagaagagacaatg |
106 |
Q |
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| T |
43440183 |
ggagaagagaggaaaaacaaaggaagctcaagggaacgcatgcctacgccctaccaatgcaaaatacaggatcaatacaccactcatagaagagacaatg |
43440084 |
T |
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| Q |
107 |
gcctctcttggtctttgttaaagcctatttccaattgggttgatatatacatgaatctccgacatgctcatattataaagagtcacgatatatatgttga |
206 |
Q |
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| T |
43440083 |
acctctcttggtctttgttaaagcctatttccaattgggttgatatatacatgaatctccgacatgctcatattataaagagtcacaatatatatgttga |
43439984 |
T |
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| Q |
207 |
tacttgataccaaataacaaacttgataacactcacagaattaatataatgatgtaaaatagcttaaagcaaaataaagccacactatgcatgcnnnnnn |
306 |
Q |
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| T |
43439983 |
tacttgataccaaataacaaacttgataacactcacagaattaatataatgatgtaaaatagcttaaagtaaaataaagccacactatgcatgcaaaaaa |
43439884 |
T |
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| Q |
307 |
ngagaatgtacatttatgagttacatagccaaggacacagtacaaagttaaacttataattggtaatccaaaagaaagaaagaaaattatgaactctaaa |
406 |
Q |
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| T |
43439883 |
agagaatgtacatttatgagttacatagccaaggacacagtacaaagttaaacttataattggtaatccaaaagaaagaaagaaaattatgaactctaaa |
43439784 |
T |
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| Q |
407 |
caaattatggagttaggtcactcttcaagtgaat |
440 |
Q |
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| T |
43439783 |
caaattatggagctaggtcactcttcaagtgaat |
43439750 |
T |
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