View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_31 (Length: 433)
Name: NF0784_low_31
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 10239605 - 10239281
Alignment:
| Q |
1 |
atacaaaatcgaaaacgaagctggttaccaaattctcccaaacgtgttttctggcttcaactcgcttattggtttagcggcacgtggatccgtggctgta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239605 |
atacaaaatcgaaaacgaagctggttaccaaattctcccaaacgtgttttctggtttcaactcgcttattggtttagcggcacgtggatccgtggctgta |
10239506 |
T |
|
| Q |
101 |
gcacgtgtgttaactggtcagtataatccaattaacggcattggattgatcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239505 |
gcacgtgtgttaactggtcagtataatccaattaacggcattggattgatcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaat |
10239406 |
T |
|
| Q |
201 |
cagatcttccttatgaaatcaaagttacaccaaacggtgatatccaaacaatcggccgttatgattttaacggcaaactcttcatgaatatgacggcgca |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10239405 |
cagatcttccttatgaaatcaaagttacaccaaacggtgatatccaaacaataggccgttatgattttaacggcaaactcttcatgaatatgacggcgca |
10239306 |
T |
|
| Q |
301 |
tcctaaaattgactccgacacaggt |
325 |
Q |
| |
|
||||||||||||||||||||||||| |
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| T |
10239305 |
tcctaaaattgactccgacacaggt |
10239281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 322
Target Start/End: Complemental strand, 10230824 - 10230504
Alignment:
| Q |
2 |
tacaaaatcgaaaacgaagctggttaccaaattctcccaaacgtgttttctggcttcaactcgcttattggtttagcggcacgtggatccgtggctgtag |
101 |
Q |
| |
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|||||||| |||||| |||||||| ||||| || ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
10230824 |
tacaaaattgaaaacaaagctggtcaccaacttatcccaaacgtgttttctggtttcaactcgcttattgctttagcggcacgtggatccgtggttgtag |
10230725 |
T |
|
| Q |
102 |
cacgtgtgttaactggtcagtataatccaattaacggcattggattgatcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaatc |
201 |
Q |
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|||| |||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
10230724 |
cacgggtgttaaccggtcagtataacccatctaacggcattggattggtcaacacaagtttagctctgtttggtaaccgtctttttgctttaggagaatc |
10230625 |
T |
|
| Q |
202 |
agatcttccttatgaaatcaaagttacaccaaacggtgatatccaaacaatcggccgttatgattttaacggcaaactcttcatgaatatgacggcgcat |
301 |
Q |
| |
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|||||||||||||||| ||||| | |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||||| |
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| T |
10230624 |
agatcttccttatgaagtcaaactaacaccaaacggtgacatccaaacaatgggccgttatgatttcaacggcaaactcttgatgagtatgacggcgcat |
10230525 |
T |
|
| Q |
302 |
cctaaaattgactccgacaca |
322 |
Q |
| |
|
|||||||| ||||| |||||| |
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| T |
10230524 |
cctaaaatagactctgacaca |
10230504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 10255000 - 10255324
Alignment:
| Q |
1 |
atacaaaatcgaaaacgaagctggttaccaaattctcccaaacgtgttttctggcttcaactcgcttattggtttagcggcacgtggatccgtggctgta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| | || || |||||||| || || | | | |
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|
| T |
10255000 |
atacaaaatcgaaaacgaagctggttaccaacttatcccaaacgtgttttctggtttcaactcgcttatagcttctgctgcacgtggctctgtcaccgca |
10255099 |
T |
|
| Q |
101 |
gcacgtgtgttaactggtcagtataatccaattaacggcattggattgatcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaat |
200 |
Q |
| |
|
|||||||| || |||| || || ||||| |||||||||||| || |||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
10255100 |
gcacgtgtcatatctggacaatacaatccttctaacggcattggtttagccaacacaagtttggctctgtttggtaacaaactttttgctttaggagaat |
10255199 |
T |
|
| Q |
201 |
cagatcttccttatgaaatcaaagttacaccaaacggtgatatccaaacaatcggccgttatgattttaacggcaaactcttcatgaatatgacggcgca |
300 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||| |||||| || || |
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| T |
10255200 |
cagatcttccttatgaaatcaatcttacgccaaacggtgatatccaaacaattggccgttatgattttaacggtaaactctccatgagtatgactgcaca |
10255299 |
T |
|
| Q |
301 |
tcctaaaattgactccgacacaggt |
325 |
Q |
| |
|
||| ||||||||| |||||||||| |
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|
| T |
10255300 |
tccgaaaattgacggcgacacaggt |
10255324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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