View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_39 (Length: 399)
Name: NF0784_low_39
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 95 - 394
Target Start/End: Original strand, 10330509 - 10330807
Alignment:
| Q |
95 |
ttattgtgtaacatttcattgcaggataatatagagcacacttgaatatgagataataatctcgattgaatgtattcggttgaagaatcttactgagtta |
194 |
Q |
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| T |
10330509 |
ttattgtctaatatttcattgcaggataatgtagagcacacttgaatatgagattataatctcgattgaatgtattcagttgaagaatcttaca-agtta |
10330607 |
T |
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| Q |
195 |
atatctattttgaagaaatagcatatcccctttgtataaggtcacttaaaaacatttgattcctttaaaaatttcgttgtttggtaagagatttatgtca |
294 |
Q |
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| T |
10330608 |
atatctattttgaagaaatagcatattccctttgtataaggtcacttgaaaacatttgattcctttaaaaatttcgttgtttggtaagagatttatgtca |
10330707 |
T |
|
| Q |
295 |
caaaattccatcggcaccaaattcaaatcttttgttagactatatcacaaaatttggaaaattataccatgtccaccgtccctgcttaccctatgatact |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10330708 |
caaaattccatcggcaccaaattcaaatcttttgttagactatatcacaaaatttggaaaattataccatgtccaccgtccctgcttaccttatgatact |
10330807 |
T |
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