View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_40 (Length: 399)
Name: NF0784_low_40
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 371
Target Start/End: Complemental strand, 32684696 - 32684341
Alignment:
| Q |
16 |
atcagaatagagaatgaacaagaaagaaaatgatcatgttaactagaaaatgatacactgatgcatcttatatagttgtagttttcgtctatgcaatcac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684696 |
atcagaatagagaatgaacaagaaagaaaatgatcatgttaactagaaaatgatacactgatgcatcttatatagttgtagttttcgtctatgcaatcac |
32684597 |
T |
|
| Q |
116 |
gatctagctagttttcatcaatcttgagagggaatgttagttacaagctctccaactaagtatactgagatgtaagtttctttgccaactgttttatgat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684596 |
gatctagctagttttcatcaatcttgagagggaatgttagttacaagctctccaactaagtatactgagatgtaagtttctttgccaactgttttatgat |
32684497 |
T |
|
| Q |
216 |
gtaacttgttcagcaagctatatgtcaatttctaaatgcttagttctttcattgaatacaatagatgttatgtaaatgacactttgactatcacaatata |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
32684496 |
gtaacttgttcagcaagctatatgtcaatttctaaatgcttagttctttcattgaataatatagatgttatgtaaatgacactttgactatcaaaatata |
32684397 |
T |
|
| Q |
316 |
acgcaatgaggtcttgtgcttcgaagttctttacggtcattgtcaacctcctcttt |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32684396 |
acgcaatgaggtcttgtgcttcgaagttctttacggtcattgtcaacctcctcttt |
32684341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 60 - 371
Target Start/End: Original strand, 32559771 - 32560082
Alignment:
| Q |
60 |
agaaaatgatacactgatgcatcttatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttac |
159 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32559771 |
agaaaatgatacactgatgcatcttatatagttgtagttttcgtctatgcaatcacgatctagctagttttcatcaatcttgagagggaatgttagttac |
32559870 |
T |
|
| Q |
160 |
aagctctccaactaagtatactgagatgtaagtttctttgccaactgttttatgatgtaacttgttcagcaagctatatgtcaatttctaaatgcttagt |
259 |
Q |
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|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32559871 |
aagctctctaactaagtatactgagatgtaagtttctttgccaactgttttatgatgtaacttattcagcaagctatatgtcaatttctaaatgcttagt |
32559970 |
T |
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| Q |
260 |
tctttcattgaatacaatagatgttatgtaaatgacactttgactatcacaatataacgcaatgaggtcttgtgcttcgaagttctttacggtcattgtc |
359 |
Q |
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|
|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32559971 |
tctttcattgaatacaatgcatgttatgtaaatgacactttcactatcacaatataacgcaacgaggtcttgtgcttcgaagttctttacggtcattgtc |
32560070 |
T |
|
| Q |
360 |
aacctcctcttt |
371 |
Q |
| |
|
|||||||||||| |
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|
| T |
32560071 |
aacctcctcttt |
32560082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 32559747 - 32559780
Alignment:
| Q |
16 |
atcagaatagagaatgaacaagaaagaaaatgat |
49 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
32559747 |
atcagaatagagaatgaacaagaaagaaaatgat |
32559780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 371
Target Start/End: Complemental strand, 32692276 - 32692239
Alignment:
| Q |
334 |
cttcgaagttctttacggtcattgtcaacctcctcttt |
371 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||| |
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|
| T |
32692276 |
cttcaaagttctttacggtcattgtcaacctcctcttt |
32692239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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