View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_42 (Length: 394)
Name: NF0784_low_42
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 12 - 287
Target Start/End: Complemental strand, 29463549 - 29463274
Alignment:
| Q |
12 |
atagggggataagggataatccaatgtttatggatgttagcagggtcacaagcaaacaaagcaaaaatgcaattcatgcaaggtagccaaatgtaaaaag |
111 |
Q |
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| T |
29463549 |
atagggggataagggataatccaatgtttacggatgttagcagggtcacaagcaaacaaagcaaaaatgcaattcatgcaaggtagccaaatgtaaaaag |
29463450 |
T |
|
| Q |
112 |
tattacagatgactataaaactagatggtcagtaaggtcatgtcgttaatatggagtatttggcatagcaaaacgaaaacgtgtggaatcagaagacgtc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29463449 |
tattacagatgactataaaactagatggtcagtaaggtcatgtcgttaatatggagtatttggcatagcaaaacgaaaatgtgtggaatcagaagacgtc |
29463350 |
T |
|
| Q |
212 |
aacagcgcatcagattgttgtttcggctcaaatgatgcttggggaatggatatcagctcagaatgtgcagcagaac |
287 |
Q |
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| T |
29463349 |
aacagcgcatcagattgttgtttcggctcaaatgatgcttggggaatggatatcagctcagaatgtgcagcagaac |
29463274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 252
Target Start/End: Original strand, 15078526 - 15078642
Alignment:
| Q |
137 |
tggtcagtaaggtcatgtcgttaatatggagtatttggcatagcaaaa-cgaaaacgtgtggaatcagaagacgtcaacagcgcatcagattgttgtttc |
235 |
Q |
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|||| |||||||| ||||| ||||||| |||| ||||||||| || |||||| ||||| | ||||||| ||||| |||||||||||||||| ||| | |
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| T |
15078526 |
tggttagtaaggttttgtcgctaatatgaagtagttggcatagataacgcgaaaatgtgtgaactcagaaggcgtcatcagcgcatcagattgtcgttgc |
15078625 |
T |
|
| Q |
236 |
ggctcaaatgatgcttg |
252 |
Q |
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| T |
15078626 |
ggctcagatggtgcttg |
15078642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 15077932 - 15078020
Alignment:
| Q |
194 |
gtggaatcagaagacgtcaacagcgcatcagattgttgtttcggctcaaatgatgcttggggaatggatatcagctcagaatgtgcagca |
283 |
Q |
| |
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||||||||||||| ||||| |||||||||| ||| | ||| | ||||| ||||||||| | |||||| |||||| |||||||||| |||| |
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| T |
15077932 |
gtggaatcagaaggcgtcatcagcgcatcaaattctcgttgcagctcagatgatgctt-gcgaatggttatcagttcagaatgtgtagca |
15078020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 58 - 107
Target Start/End: Complemental strand, 11988923 - 11988874
Alignment:
| Q |
58 |
cacaagcaaacaaagcaaaaatgcaattcatgcaaggtagccaaatgtaa |
107 |
Q |
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|||||| |||||||||||||||||||||| || ||||| ||||||||||| |
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| T |
11988923 |
cacaagaaaacaaagcaaaaatgcaattcgtgtaaggttgccaaatgtaa |
11988874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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