View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_44 (Length: 391)

Name: NF0784_low_44
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_44
NF0784_low_44
[»] chr8 (17 HSPs)
chr8 (107-369)||(25489282-25489547)
chr8 (107-266)||(24913747-24913915)
chr8 (107-266)||(25646202-25646369)
chr8 (107-231)||(25603826-25603951)
chr8 (107-204)||(25799543-25799640)
chr8 (107-177)||(25321934-25322004)
chr8 (11-64)||(25694742-25694795)
chr8 (11-64)||(25489590-25489643)
chr8 (11-64)||(25646412-25646465)
chr8 (16-64)||(24913658-24913706)
chr8 (158-253)||(25569119-25569214)
chr8 (11-64)||(25322047-25322098)
chr8 (11-64)||(25604000-25604053)
chr8 (107-166)||(25694637-25694699)
chr8 (192-237)||(25321889-25321934)
chr8 (11-48)||(25799658-25799695)
chr8 (265-293)||(25385414-25385442)
[»] scaffold0070 (3 HSPs)
scaffold0070 (107-266)||(17790-17951)
scaffold0070 (19-64)||(17704-17749)
scaffold0070 (265-293)||(18361-18389)
[»] scaffold0526 (1 HSPs)
scaffold0526 (218-263)||(11146-11191)
[»] chr3 (1 HSPs)
chr3 (218-263)||(11971234-11971279)


Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 107 - 369
Target Start/End: Complemental strand, 25489547 - 25489282
Alignment:
Q  107 ggtgcagtatttggaggaga---gtagtgagagtcttgactcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagtttttg 203  Q
    |||||||| |||||||||||   ||||| || ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||    
T  25489547 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaataggaagaaaagatcttctattactgaactttctaatcagtttttg 25489448  T
Q  204 gttgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtttgcccga 303  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25489447 attgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataatcttgtgtcaaaagtacaaaaatatattgtttgcacga 25489348  T
Q  304 aatcaacaagcaaaaaagatgtttnnnnnnnnncaattgcttccagtaattaaactctttgatgat 369  Q
    ||||||||||||||||||||||||         ||||||||||||||||||||||| |||||||||    
T  25489347 aatcaacaagcaaaaaagatgtttaaaaaaaaacaattgcttccagtaattaaactatttgatgat 25489282  T

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Target: chr8; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 107 - 266
Target Start/End: Original strand, 24913747 - 24913915
Alignment:
Q  107 ggtgcagtatttggaggagagtagtgagagtcttga----ctcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagttttt 202  Q
    |||||||| ||||||||| ||||||||| |||||||    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  24913747 ggtgcagtctttggaggaaagtagtgagcgtcttgattgactcattgtgtaagaatgggaagaaaagatcttctattactgaactttctaatcagttttt 24913846  T
Q  203 ggttgaatatttctgtcttttatgtcatatcaggtggt-----gtctacttactaggttgctacataat 266  Q
    ||||||||||||||||||||||||| ||| ||||||||     ||||||||||||||||||||||||||    
T  24913847 ggttgaatatttctgtcttttatgttatagcaggtggtgtctagtctacttactaggttgctacataat 24913915  T

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Target: chr8; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 107 - 266
Target Start/End: Complemental strand, 25646369 - 25646202
Alignment:
Q  107 ggtgcagtatttggaggaga---gtagtgagagtcttgactcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagtttttg 203  Q
    |||||||| |||||||||||   ||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||     
T  25646369 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaaaagatcttctattactgaaccttctaatcagttttta 25646270  T
Q  204 gttgaatatttctgtcttttatgtcatatcaggtggtg-----tctacttactaggttgctacataat 266  Q
    |||||||||||||||||||||||| ||| |||||||||     |||||||||||||||||||||||||    
T  25646269 gttgaatatttctgtcttttatgttatagcaggtggtgtctagtctacttactaggttgctacataat 25646202  T

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Target: chr8; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 107 - 231
Target Start/End: Complemental strand, 25603951 - 25603826
Alignment:
Q  107 ggtgcagtatttggaggagagtagtgagagtcttgactcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagt-ttttggt 205  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| ||||||| |||||||    
T  25603951 ggtgcagtctttggaggagagtagtgagggtcttgactcattgtgtacgaatgggaagaaaagatcttatattactgaactttctaatcagttttttggt 25603852  T
Q  206 tgaatatttctgtcttttatgtcata 231  Q
    |||||||||||| ||||| |||||||    
T  25603851 tgaatatttctgccttttttgtcata 25603826  T

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Target: chr8; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 25799640 - 25799543
Alignment:
Q  107 ggtgcagtatttggaggagagtagtgagagtcttgactcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagtttttgg 204  Q
    |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||    
T  25799640 ggtgcagtctttggaggagagtagtgagggtcttgaatcattgtgtaagaatgggaagaaaagatcttctattactgaactttgtaatcagtttttgg 25799543  T

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Target: chr8; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 25322004 - 25321934
Alignment:
Q  107 ggtgcagtatttggaggagagtagtgagagtcttgactcattgtgtaagaatgggaagaaaatatcttcta 177  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||    
T  25322004 ggtgcagtctttggaggagagtagtgagggtcttgactcattgtgtaagaatgggaagaaaagatcttcta 25321934  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 25694795 - 25694742
Alignment:
Q  11 cacagaagcatgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25694795 cacagaagcatgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 25694742  T

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Target: chr8; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 25489643 - 25489590
Alignment:
Q  11 cacagaagcatgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 64  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25489643 cacagaagcatgtaaatcgtgtgtattgtatccatttatgttgtatcccctctc 25489590  T

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Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 25646465 - 25646412
Alignment:
Q  11 cacagaagcatgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 64  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25646465 cacaaaagcatgtaaatcgtgtgtactatatccatttatgttgtatcccctctc 25646412  T

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Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 24913658 - 24913706
Alignment:
Q  16 aagcatgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 64  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24913658 aagcatgtaaatcgtgtgtactctatccatttatgttgtatcccctctc 24913706  T

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Target: chr8; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 158 - 253
Target Start/End: Complemental strand, 25569214 - 25569119
Alignment:
Q  158 tgggaagaaaatatcttctattactgaactttccaatcagtttttggttgaatatttctgtcttttatgtcatatcaggtggtgtctacttactag 253  Q
    ||||| ||||| ||||||||||||||||||| | ||||| ||||| |||| |||||| | |||| | ||||||| ||||||||||||| |||||||    
T  25569214 tgggatgaaaagatcttctattactgaacttgctaatcatttttttgttgcatatttatttcttctctgtcataccaggtggtgtctagttactag 25569119  T

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Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 25322098 - 25322047
Alignment:
Q  11 cacagaagcatgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 64  Q
    ||||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  25322098 cacagaagcatgtaaattgtgtgtactgtatccattta--ttgtatcccctctc 25322047  T

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Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 25604053 - 25604000
Alignment:
Q  11 cacagaagcatgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 64  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||||| |||||||    
T  25604053 cacagaagcatgtaaatcgtgtgtactatatccatatatattgtataccctctc 25604000  T

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Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 107 - 166
Target Start/End: Complemental strand, 25694699 - 25694637
Alignment:
Q  107 ggtgcagtatttggaggaga---gtagtgagagtcttgactcattgtgtaagaatgggaagaa 166  Q
    |||||||| |||||||||||   ||||| || |||||||||||||||||||||||||||||||    
T  25694699 ggtgcagtctttggaggagaatagtagtaagggtcttgactcattgtgtaagaatgggaagaa 25694637  T

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Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 25321934 - 25321889
Alignment:
Q  192 aatcagtttttggttgaatatttctgtcttttatgtcatatcaggt 237  Q
    ||||||||||||||||||||| |||| ||||||||||||| |||||    
T  25321934 aatcagtttttggttgaatatatctgccttttatgtcatagcaggt 25321889  T

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Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 48
Target Start/End: Complemental strand, 25799695 - 25799658
Alignment:
Q  11 cacagaagcatgtaaatcgtgtgtactgtatccattta 48  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  25799695 cacagaagcatgtaaatggtgtgtactgtatccattta 25799658  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 293
Target Start/End: Complemental strand, 25385442 - 25385414
Alignment:
Q  265 atcttgtgtcaaaagtacaaaaatatatt 293  Q
    |||||||||||||||||||||||||||||    
T  25385442 atcttgtgtcaaaagtacaaaaatatatt 25385414  T

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Target: scaffold0070 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 107 - 266
Target Start/End: Original strand, 17790 - 17951
Alignment:
Q  107 ggtgcagtatttggaggagagtagtgagagtcttga----ctcattgtgtaagaatgggaagaaaatatcttctattactgaactttccaatcagttttt 202  Q
    ||||||||  |||||||| ||||||||| |||||||    |||||||||||||||||||||||||| ||  ||||||||||||||||| |||||||||||    
T  17790 ggtgcagtccttggaggaaagtagtgagggtcttgattgactcattgtgtaagaatgggaagaaaagat--tctattactgaactttctaatcagttttt 17887  T
Q  203 ggttgaatatttctgtcttttatgtcatatcaggtggtgtctacttactaggttgctacataat 266  Q
    |||| | ||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  17888 ggttaattatttttgtcttttatgttatagcaggtggtgtctacttactaggttgctacataat 17951  T

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Target: scaffold0070; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 17704 - 17749
Alignment:
Q  19 catgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  17704 catgtaaatcgtgtgtactgtatccatttatgttgtatcccctctc 17749  T

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Target: scaffold0070; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 293
Target Start/End: Original strand, 18361 - 18389
Alignment:
Q  265 atcttgtgtcaaaagtacaaaaatatatt 293  Q
    |||||||||||||||||||||||||||||    
T  18361 atcttgtgtcaaaagtacaaaaatatatt 18389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0526 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0526
Description:

Target: scaffold0526; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 11146 - 11191
Alignment:
Q  218 tcttttatgtcatatcaggtggtgtctacttactaggttgctacat 263  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||    
T  11146 tcttttgtgtcataccatgtggtgtctacttactagtttgctacat 11191  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 11971234 - 11971279
Alignment:
Q  218 tcttttatgtcatatcaggtggtgtctacttactaggttgctacat 263  Q
    |||||| ||||||| || |||||||||||||||||| |||||||||    
T  11971234 tcttttgtgtcataccatgtggtgtctacttactagtttgctacat 11971279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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