View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_50 (Length: 369)
Name: NF0784_low_50
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 50 - 243
Target Start/End: Complemental strand, 33891058 - 33890865
Alignment:
| Q |
50 |
agttccacattgcgtagtctcaagctaactacttctcgccttccaacgaagattggtaccgcggcctcagaccttccgtccttcgtctactgtgaaaaca |
149 |
Q |
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| T |
33891058 |
agttccacattgcgtagtctcaagctaattacttctcgccttccaacgaagattggtatcacggcctcagaccttccgtccttcgtctactgtgaaaaca |
33890959 |
T |
|
| Q |
150 |
ttctttctattttctctatcgatttgcccaagttatcaaagttttgcttaactccatggaatttgaagagttagaaattccacgtgcctatgct |
243 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
33890958 |
ttctttctatttcatctatcgattcgcccaagttatcaaagttttgcttaactccatggagtttgaagagttagaaattccacgtgcctttgct |
33890865 |
T |
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