View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_55 (Length: 357)

Name: NF0784_low_55
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_55
NF0784_low_55
[»] chr7 (19 HSPs)
chr7 (33-347)||(26204040-26204354)
chr7 (33-347)||(26223678-26223992)
chr7 (125-247)||(26191503-26191625)
chr7 (118-247)||(19103334-19103463)
chr7 (118-259)||(26179314-26179455)
chr7 (137-268)||(26155453-26155584)
chr7 (141-252)||(26088036-26088147)
chr7 (141-252)||(26111824-26111935)
chr7 (137-268)||(26128817-26128948)
chr7 (137-247)||(26242647-26242757)
chr7 (118-268)||(26297676-26297826)
chr7 (144-244)||(26302059-26302159)
chr7 (118-245)||(26186473-26186600)
chr7 (137-244)||(26251095-26251202)
chr7 (125-256)||(26227234-26227365)
chr7 (125-256)||(26207673-26207804)
chr7 (280-346)||(26302211-26302277)
chr7 (305-346)||(26297875-26297916)
chr7 (34-70)||(26128714-26128750)
[»] chr4 (1 HSPs)
chr4 (118-245)||(44903481-44903608)


Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 33 - 347
Target Start/End: Original strand, 26204040 - 26204354
Alignment:
Q  33 tgtttgcctcatacaattgagatgacacctttgcagctagctgattggattagggttaagaattcagcaacaggtgcttttggtgcaatgtttgaatccg 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |    
T  26204040 tgtttgcctcatacaattgagatgacacctttgcagctagctgattggattagggttaagacttcagcaacaggtgcatttggtgcaatgtttgaatcag 26204139  T
Q  133 agggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtat 232  Q
    ||  |||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26204140 agaaaagaagctttggaacactatacaatagttttcatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtat 26204239  T
Q  233 aggaccagtttcagcatggattaacaaagacgatgataaaggatacacggaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaag 332  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26204240 aggaccggtttcagcatggattaacaaagacgatgataaaggatacacggaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaag 26204339  T
Q  333 gaaaatgagtctgtg 347  Q
    ||||| |||||||||    
T  26204340 gaaaacgagtctgtg 26204354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 33 - 347
Target Start/End: Original strand, 26223678 - 26223992
Alignment:
Q  33 tgtttgcctcatacaattgagatgacacctttgcagctagctgattggattagggttaagaattcagcaacaggtgcttttggtgcaatgtttgaatccg 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    
T  26223678 tgtttgcctcatacaattgagatgacacctttgcagctagctgattggattagggttaagacttcagcaacaggtgcttttggtgcaatgtttgaatcag 26223777  T
Q  133 agggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtat 232  Q
    ||  |||||| | ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26223778 agaaaagaagctttggaacactatacaatagttttcatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtat 26223877  T
Q  233 aggaccagtttcagcatggattaacaaagacgatgataaaggatacacggaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaag 332  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26223878 aggaccggtttcagcatggattaacaaagacgatgataaaggatacacagaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaag 26223977  T
Q  333 gaaaatgagtctgtg 347  Q
    ||||| |||||||||    
T  26223978 gaaaacgagtctgtg 26223992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 125 - 247
Target Start/End: Original strand, 26191503 - 26191625
Alignment:
Q  125 tgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatct 224  Q
    |||||| |||| || ||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||| |||||||  ||||||||||||    
T  26191503 tgaatcagaggaaaaaagctatggcacactatacaatagttttcatgaactagaaagtgaatatgagaaactttgtaatactacaagggggatcaaatct 26191602  T
Q  225 tggagtataggaccagtttcagc 247  Q
    |||||| ||||||||||||||||    
T  26191603 tggagtgtaggaccagtttcagc 26191625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 118 - 247
Target Start/End: Complemental strand, 19103463 - 19103334
Alignment:
Q  118 caatgtttgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggat 217  Q
    ||||||||||||| |||  |||||||||||| |||||||||||||||||| ||||||| |||||||||||||  ||||||||||| |||||| | |||||    
T  19103463 caatgtttgaatcagagaaaagaagttatggaacactatacaatagttttcatgaactggaaagtgattatgtaaaacttggtaagactacattggggat 19103364  T
Q  218 caaatcttggagtataggaccagtttcagc 247  Q
    |||||||||| || ||||||||||||||||    
T  19103363 caaatcttggtgtgtaggaccagtttcagc 19103334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 118 - 259
Target Start/End: Original strand, 26179314 - 26179455
Alignment:
Q  118 caatgtttgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggat 217  Q
    ||||||||||||| |||  |||||||||||| |||||||||||||||||| ||||||| |||||||||||||| ||| |  |||| |||||||| |||||    
T  26179314 caatgtttgaatcagagaaaagaagttatggaacactatacaatagttttcatgaacttgaaagtgattatgaaaaattaagtaacactacaatggggat 26179413  T
Q  218 caaatcttggagtataggaccagtttcagcatggattaacaa 259  Q
    |||| |||||||| |||||||||||||||| |||| ||||||    
T  26179414 caaaacttggagtgtaggaccagtttcagcttggactaacaa 26179455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 137 - 268
Target Start/End: Original strand, 26155453 - 26155584
Alignment:
Q  137 aagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtatagga 236  Q
    |||||||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||| |||| ||||| || ||||||||| |||||||| |||||    
T  26155453 aagaagttatggaacactatacaatagttttcatgaactggaaagtgattatgaaaaacttagtaacactaccatggggatcaaaacttggagtgtagga 26155552  T
Q  237 ccagtttcagcatggattaacaaagacgatga 268  Q
    ||||||||| |||||  |||||| || |||||    
T  26155553 ccagtttcatcatgggctaacaaggatgatga 26155584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 141 - 252
Target Start/End: Original strand, 26088036 - 26088147
Alignment:
Q  141 agttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccag 240  Q
    |||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||| |  |||||||| |||||||||||||||||| |||| ||||    
T  26088036 agttatggaacactatacaatagttttcatgaactggaaagtgattatgaaaaacttggaagcactacaatggggatcaaatcttggagtgtagggccag 26088135  T
Q  241 tttcagcatgga 252  Q
    ||||||| ||||    
T  26088136 tttcagcttgga 26088147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 141 - 252
Target Start/End: Original strand, 26111824 - 26111935
Alignment:
Q  141 agttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccag 240  Q
    |||||||| |||||||||||||||||| ||||||| |||||||||||||| |||||||| |  |||||||| |||||||||||||||||| |||| ||||    
T  26111824 agttatggaacactatacaatagttttcatgaactggaaagtgattatgaaaaacttggaagcactacaatggggatcaaatcttggagtgtagggccag 26111923  T
Q  241 tttcagcatgga 252  Q
    ||||||| ||||    
T  26111924 tttcagcttgga 26111935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 137 - 268
Target Start/End: Original strand, 26128817 - 26128948
Alignment:
Q  137 aagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtatagga 236  Q
    |||||||||||| ||||||| |||||||||| ||||||| |||||||||||||| ||  || |||| |||||  | |||||||||||||||||| |||||    
T  26128817 aagaagttatggaacactatgcaatagttttcatgaactggaaagtgattatgaaaacatttgtaacactaccttggggatcaaatcttggagtgtagga 26128916  T
Q  237 ccagtttcagcatggattaacaaagacgatga 268  Q
    ||||||||| |||||  |||||| || |||||    
T  26128917 ccagtttcatcatgggctaacaaggatgatga 26128948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 137 - 247
Target Start/End: Original strand, 26242647 - 26242757
Alignment:
Q  137 aagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtatagga 236  Q
    |||||| |||||  |||||||||| |||||| ||||||| ||||||||||||||||| ||| ||||||||||||| || |||||||| |||||| | |||    
T  26242647 aagaagctatgggtcactatacaacagttttcatgaacttgaaagtgattatgagaatcttagtaaaactacaatcggaatcaaatcatggagtgtcgga 26242746  T
Q  237 ccagtttcagc 247  Q
    |||||||||||    
T  26242747 ccagtttcagc 26242757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 118 - 268
Target Start/End: Original strand, 26297676 - 26297826
Alignment:
Q  118 caatgtttgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggat 217  Q
    |||||| |||||| | || |||||| |||||  |||||||||| |||||| ||||||| |||||||||||||||||||||  |||||||||||| || ||    
T  26297676 caatgtatgaatcagcggaaagaagctatgggtcactatacaacagttttcatgaacttgaaagtgattatgagaaactttttaaaactacaatcggaat 26297775  T
Q  218 caaatcttggagtataggaccagtttcagcatggattaacaaagacgatga 268  Q
    ||| || |||||| | |||||||||||||| |||  |||||| || |||||    
T  26297776 caagtcatggagtgtcggaccagtttcagcctgggctaacaaggatgatga 26297826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 26302059 - 26302159
Alignment:
Q  144 tatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtataggaccagttt 243  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||||| ||||||| || |||| ||||| || ||||||||||||| | ||||||||||||    
T  26302059 tatggaacactatacaatagttttcatgaacttgaaagtgattatgtgaaacttagtcaaacaacaatgggaatcaaatcttggaatgtaggaccagttt 26302158  T
Q  244 c 244  Q
    |    
T  26302159 c 26302159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 26186473 - 26186600
Alignment:
Q  118 caatgtttgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggat 217  Q
    |||| |||||||| |||  || |||||| || |||||||||||||||||| ||||||| || ||||||||| | |||||| |||| ||||   | |||||    
T  26186473 caatttttgaatcagagaaaaaaagttacggaacactatacaatagttttcatgaactggagagtgattataaaaaacttagtaacactatcttggggat 26186572  T
Q  218 caaatcttggagtataggaccagtttca 245  Q
    |||||| |||||| ||||||||||||||    
T  26186573 caaatcatggagtgtaggaccagtttca 26186600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 244
Target Start/End: Original strand, 26251095 - 26251202
Alignment:
Q  137 aagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatcttggagtatagga 236  Q
    |||||| |||||  |||||||||| |||||| ||||||| |||| |||||| ||||| ||| |||||| |||||| || |||||||| |||||| | |||    
T  26251095 aagaagctatgggtcactatacaacagttttcatgaacttgaaaatgattacgagaagctttgtaaaagtacaattggaatcaaatcatggagtgtcgga 26251194  T
Q  237 ccagtttc 244  Q
    ||||||||    
T  26251195 ccagtttc 26251202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 256
Target Start/End: Original strand, 26227234 - 26227365
Alignment:
Q  125 tgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatct 224  Q
    |||||| ||||||| ||||||||| ||  ||| |||||| ||| | ||||| ||| ||||||||||||| |||   || |  ||||| ||||||||| |     
T  26227234 tgaatcagagggaaaaagttatggaactttatgcaatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagca 26227333  T
Q  225 tggagtataggaccagtttcagcatggattaa 256  Q
    |||||| |||||||||||||||||||| ||||    
T  26227334 tggagtgtaggaccagtttcagcatggcttaa 26227365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 256
Target Start/End: Original strand, 26207673 - 26207804
Alignment:
Q  125 tgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggatcaaatct 224  Q
    |||||| ||||||||||| ||||| || |||  |||||| ||| | ||||| ||| ||||||||||||| |||   || |  ||||| ||||||||| |     
T  26207673 tgaatcggagggaagaagctatggaactctaagcaatagctttcacgaacttgaaggtgattatgagaatctttacaagagcacaatggggatcaaagca 26207772  T
Q  225 tggagtataggaccagtttcagcatggattaa 256  Q
    |||||  |||||||||||||||||||| ||||    
T  26207773 tggagcgtaggaccagtttcagcatgggttaa 26207804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 26302211 - 26302277
Alignment:
Q  280 cggaaaagaacattggaaaagatcaagaattggtaaattggcttaattctaaggaaaatgagtctgt 346  Q
    |||| |||||| ||||||||||   ||||||||||||||||||||| || ||| |||||||||||||    
T  26302211 cggagaagaactttggaaaagaaacagaattggtaaattggcttaactcaaagcaaaatgagtctgt 26302277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Original strand, 26297875 - 26297916
Alignment:
Q  305 agaattggtaaattggcttaattctaaggaaaatgagtctgt 346  Q
    ||||||| |||||||||||||||| ||||||||||| |||||    
T  26297875 agaattgctaaattggcttaattcgaaggaaaatgaatctgt 26297916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 26128714 - 26128750
Alignment:
Q  34 gtttgcctcatacaattgagatgacacctttgcagct 70  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  26128714 gtttgcctcatacaattgagatgactcctctgcagct 26128750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 118 - 245
Target Start/End: Original strand, 44903481 - 44903608
Alignment:
Q  118 caatgtttgaatccgagggaagaagttatggcacactatacaatagttttaatgaactagaaagtgattatgagaaacttggtaaaactacaatagggat 217  Q
    |||| |||||||| |||| |||||||||||| ||| ||| |||||||||| ||||||| |||||||||||||||||| || ||||||||||||| |||||    
T  44903481 caatttttgaatcggaggcaagaagttatgggacaatatgcaatagttttcatgaacttgaaagtgattatgagaaagttagtaaaactacaatggggat 44903580  T
Q  218 caaatcttggagtataggaccagtttca 245  Q
     || ||||||||| ||||||||||||||    
T  44903581 taagtcttggagtgtaggaccagtttca 44903608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 6724 times since January 2019
Visitors: 5770