View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_58 (Length: 353)

Name: NF0784_low_58
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_58
NF0784_low_58
[»] chr3 (14 HSPs)
chr3 (3-324)||(5250856-5251177)
chr3 (5-324)||(5268745-5269064)
chr3 (5-321)||(4387967-4388277)
chr3 (19-314)||(5299434-5299729)
chr3 (7-186)||(6447941-6448120)
chr3 (133-299)||(6479025-6479191)
chr3 (160-298)||(6519206-6519344)
chr3 (133-256)||(5281471-5281594)
chr3 (160-293)||(6553487-6553620)
chr3 (160-293)||(8455501-8455634)
chr3 (133-237)||(6948089-6948193)
chr3 (133-293)||(8590549-8590709)
chr3 (208-293)||(6736885-6736970)
chr3 (24-101)||(6838145-6838222)
[»] chr4 (1 HSPs)
chr4 (208-299)||(41068372-41068463)
[»] scaffold0425 (1 HSPs)
scaffold0425 (160-293)||(6526-6659)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 3 - 324
Target Start/End: Original strand, 5250856 - 5251177
Alignment:
Q  3 catgtttcaatccaagcatatccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaa 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  5250856 catgtttcaatccgagcatatccttttgctttgcaagaaattctagcttctctagcaattctttaatcctagattcaaatggattagtgaaagatgaaaa 5250955  T
Q  103 gaagtcgaataccttgctagtagaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatat 202  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5250956 gaagtcgaataccttgctagtagaaggttgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatat 5251055  T
Q  203 gcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttcatctcagcttcttccaacacatggttgatagaattgagtgtta 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5251056 gcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtattgcttcatctccgcttcttccaacacatggttgatagaattgagtgtta 5251155  T
Q  303 ttagaagtttctccagcagatt 324  Q
    ||||||||||||||||||||||    
T  5251156 ttagaagtttctccagcagatt 5251177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 5 - 324
Target Start/End: Original strand, 5268745 - 5269064
Alignment:
Q  5 tgtttcaatccaagcatatccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaaga 104  Q
    ||||| ||||||||||||| |||||| |||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |||| ||    
T  5268745 tgttttaatccaagcatatgcttttgttttgcaagaaattctagcttctctagcaattctttgatcctagactcaaatggattagtgaaagacgaaatga 5268844  T
Q  105 agtcgaataccttgctagtagaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgc 204  Q
    |||||||||||||||||||||||| ||||||||||  |||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5268845 agtcgaataccttgctagtagaaggttgagattcaagtttctgcttcttcaatggtgtatcagttgcaatctcatctaacagctggtcaacctcatatgc 5268944  T
Q  205 ataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttcatctcagcttcttccaacacatggttgatagaattgagtgttatt 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5268945 ataatgtttaagatcatcaagccacttcttcacgtacatgctttggaactgcttcatctcagcttcttccaacacatggttgatagaattgagtgttatt 5269044  T
Q  305 agaagtttctccagcagatt 324  Q
    ||||||||||| ||||||||    
T  5269045 agaagtttctctagcagatt 5269064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 321
Target Start/End: Complemental strand, 4388277 - 4387967
Alignment:
Q  5 tgtttcaatccaagcatatccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaaga 104  Q
    ||||||| ||| ||||||||||||||||| ||||||||||| | |||||||||||||||| | |||||||| |||||||||||| |||||||||||||||    
T  4388277 tgtttcagtccgagcatatccttttgcttcgcaagaaattctaacttctctagcaattctttgatcctagattcaaatggattaatgaaagatgaaaaga 4388178  T
Q  105 agtcgaataccttgctagtagaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgc 204  Q
    ||| |||||||||||||||||||| || | |||      || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4388177 agttgaataccttgctagtagaaggttcaaatt------tctgcttcttcaatggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgc 4388084  T
Q  205 ataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttcatctcagcttcttccaacacatggttgatagaattgagtgttatt 304  Q
    || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  4388083 attatgtttaagatcatcaagccacttcttcacggacatgctttggtactgcttcatctccgcttcttccaacacacggttgatagaattgagtgttatt 4387984  T
Q  305 agaagtttctccagcag 321  Q
    ||||||||||| |||||    
T  4387983 agaagtttctctagcag 4387967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 5299434 - 5299729
Alignment:
Q  19 catatccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaagtcgaataccttg 118  Q
    |||||||||||||||||| |||||||| | |||||||||||||||| | |||||||||||||| |||| |||  | ||||||||||||||||||||||||    
T  5299434 catatccttttgctttgctagaaattctaacttctctagcaattctttgatcctagactcaaagggatcagtacacgatgaaaagaagtcgaataccttg 5299533  T
Q  119 ctagtagaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagat 218  Q
    |||||||||| |||||| ||| |||||||||||||   |||||  |  |||||||||||||| || || || ||  | |||||  ||  |||||||||||    
T  5299534 ctagtagaaggttgagaatcaactttcagcttcttgtttggtgtgtaggttgcaatctcatccaaaagttgatctgcttcatacacaacatgtttaagat 5299633  T
Q  219 catcaagccacttcttcacgtacatgctttggtactgcttcatctcagcttcttccaacacatggttgatagaattgagtgttattagaagtttct 314  Q
    || |||||||||||||||||||   ||||||||| |||||  |||| |||||||| |  ||||||||||||||||||||||| | | |||||||||    
T  5299634 caccaagccacttcttcacgtatgagctttggtattgctttgtctccgcttcttcgagtacatggttgatagaattgagtgtaacttgaagtttct 5299729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 6448120 - 6447941
Alignment:
Q  7 tttcaatccaagcatatccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaaagaag 106  Q
    ||||||| | |||| ||||||||||| ||||||| | || || |||| |||||| ||| | |||||||| ||||||||||| |  | || || || ||||    
T  6448120 tttcaattccagcacatccttttgctctgcaagataatctagattctttagcaagtctttgatcctagattcaaatggattggcaagagttggaatgaag 6448021  T
Q  107 tcgaataccttgctagtagaagattgagattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacag 186  Q
    | ||| |  ||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||    
T  6448020 ttgaaaatattgctagtagaaggttgagattcggccttcagcttcttcactggtgcatcagttgcaatctcatctaacag 6447941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 133 - 299
Target Start/End: Complemental strand, 6479191 - 6479025
Alignment:
Q  133 agattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttc 232  Q
    |||||||||||||||||| || ||   ||||||||| |  ||||||||||| || |||||  | |||||  ||  ||||||||| | |||||||||||||    
T  6479191 agattcagctttcagcttatttagcattgcatcagtagatatctcatctaatagttggtctgcttcataaacaacatgtttaagtttatcaagccacttc 6479092  T
Q  233 ttcacgtacatgctttggtactgcttcatctcagcttcttccaacacatggttgatagaattgagtg 299  Q
    ||||| || ||| ||||||||||||| ||||| |||||||||| |||||||||||||||||||||||    
T  6479091 ttcacatatatgatttggtactgctttatctctgcttcttccagcacatggttgatagaattgagtg 6479025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 160 - 298
Target Start/End: Complemental strand, 6519344 - 6519206
Alignment:
Q  160 tgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttc 259  Q
    ||||||||| | |||||||||||| || |||||  | |||||  ||  ||||||||| |||||||||||||||||||| ||  || ||||||||||||||    
T  6519344 tgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttc 6519245  T
Q  260 atctcagcttcttccaacacatggttgatagaattgagt 298  Q
    | ||| |||||||| | ||||||||||||||||||||||    
T  6519244 agctctgcttcttcaagcacatggttgatagaattgagt 6519206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 256
Target Start/End: Original strand, 5281471 - 5281594
Alignment:
Q  133 agattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttc 232  Q
    ||||||| |||||||||| |||||| |||| ||||| ||||||||||| || |  |||||  |||||||| ||  |||||||||||||||||||||||||    
T  5281471 agattcatctttcagcttattcagttgtgcgtcagtagcaatctcatcgaaaatttggtctgcctcatatacagcatgtttaagatcatcaagccacttc 5281570  T
Q  233 ttcacgtacatgctttggtactgc 256  Q
    || || ||  |||||| |||||||    
T  5281571 tttacatatgtgcttttgtactgc 5281594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 293
Target Start/End: Complemental strand, 6553620 - 6553487
Alignment:
Q  160 tgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttc 259  Q
    ||||||||| | |||||||||||| || |||||  |||||||  ||  ||||||||| |||||||||||||||||||| ||  || |||||||||||||     
T  6553620 tgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttt 6553521  T
Q  260 atctcagcttcttccaacacatggttgatagaat 293  Q
    ||||| ||||| || |  || |||||||||||||    
T  6553520 atctctgcttcgtctagtacttggttgatagaat 6553487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 293
Target Start/End: Original strand, 8455501 - 8455634
Alignment:
Q  160 tgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttc 259  Q
    ||||||||| | |||||||||||| || |||||  | |||||  ||  |||||||||||||||||||||||||||||| ||  || |||||||||||||     
T  8455501 tgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagatcatcaagccacttcttcacatatttgttttggtactgcttt 8455600  T
Q  260 atctcagcttcttccaacacatggttgatagaat 293  Q
    ||||| ||||| || |  || |||||||||||||    
T  8455601 atctctgcttcgtctagtacttggttgatagaat 8455634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 6948089 - 6948193
Alignment:
Q  133 agattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttc 232  Q
    |||||||||||||||||| || ||   ||||||||| | ||||||||||||||| |||||  |||||||  ||  ||||||||| |||||||||||||||    
T  6948089 agattcagctttcagcttatttagcattgcatcagtagaaatctcatctaacagttggtctgcctcatagacaacatgtttaagttcatcaagccacttc 6948188  T
Q  233 ttcac 237  Q
    |||||    
T  6948189 ttcac 6948193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 293
Target Start/End: Original strand, 8590549 - 8590709
Alignment:
Q  133 agattcagctttcagcttcttcagtggtgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttc 232  Q
    ||||| |||||||||||| || ||   ||||||||| | |||||||||||| || |||||  | |||||  ||  ||||||||| |||||||||||||||    
T  8590549 agatttagctttcagcttatttagcattgcatcagtagaaatctcatctaatagttggtctgcttcataaacaacatgtttaagttcatcaagccacttc 8590648  T
Q  233 ttcacgtacatgctttggtactgcttcatctcagcttcttccaacacatggttgatagaat 293  Q
    ||||| ||  ||||| |||||||||| ||||| ||||| ||||  || | |||||||||||    
T  8590649 ttcacatatttgcttcggtactgctttatctctgcttcgtccagtacttcgttgatagaat 8590709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 293
Target Start/End: Original strand, 6736885 - 6736970
Alignment:
Q  208 atgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttcatctcagcttcttccaacacatggttgatagaat 293  Q
    ||||||||| |||||||||||||||||||| ||  || ||||||||||||| ||||| ||||| || |  || |||||||||||||    
T  6736885 atgtttaagttcatcaagccacttcttcacatatttgttttggtactgctttatctctgcttcgtctagtacttggttgatagaat 6736970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 6838222 - 6838145
Alignment:
Q  24 ccttttgctttgcaagaaattcaagcttctctagcaattctataatcctagactcaaatggattagtgaaagatgaaa 101  Q
    ||||||||| ||||||| |||  |||||  ||||||| ||| | |||||||| |||||||||||||||| || |||||    
T  6838222 ccttttgctctgcaagatattttagcttgcctagcaactctttgatcctagattcaaatggattagtgatagctgaaa 6838145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 41068463 - 41068372
Alignment:
Q  208 atgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttcatctcagcttcttccaacacatggttgatagaattgagtg 299  Q
    ||||||||| ||||||||||| |||||||| || |||||||||||||| |  | ||| ||||||||||||||||||||||||||||||||||    
T  41068463 atgtttaagttcatcaagccaattcttcacatatatgctttggtactgttatagctctgcttcttccaacacatggttgatagaattgagtg 41068372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 293
Target Start/End: Complemental strand, 6659 - 6526
Alignment:
Q  160 tgcatcagttgcaatctcatctaacagctggtcaacctcatatgcataatgtttaagatcatcaagccacttcttcacgtacatgctttggtactgcttc 259  Q
    ||||||||| | |||||||||||| || |||||  |||||||  ||  ||||||||| |||||||||||||||||||| ||  || |||||||||||||     
T  6659 tgcatcagtagaaatctcatctaatagttggtctgcctcataaacaacatgtttaagttcatcaagccacttcttcacatatttgttttggtactgcttt 6560  T
Q  260 atctcagcttcttccaacacatggttgatagaat 293  Q
    ||||| ||||| || |  || |||||||||||||    
T  6559 atctctgcttcgtctagtacttggttgatagaat 6526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 6022 times since January 2019
Visitors: 5762