View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_59 (Length: 347)
Name: NF0784_low_59
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 128 - 331
Target Start/End: Original strand, 21433674 - 21433877
Alignment:
| Q |
128 |
gactgatatgaaggagaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaaaggtgagtgcgctgctagtttct |
227 |
Q |
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| T |
21433674 |
gactgaaatgaaggagaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaaaggtgagtgcgctgctagtttct |
21433773 |
T |
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| Q |
228 |
gacttgttttttctgaattatgtaattggaatggttagtgtagtgatagttaatctatgaacaatttcaaaatatacttctttttacctatacaaattga |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
21433774 |
gacttgttttttctgaattatgtaattggaatggttagtgtagtggtagttaatctatgaacaatttcaaaatatacttctttttacctatacaaatgga |
21433873 |
T |
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| Q |
328 |
caaa |
331 |
Q |
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|||| |
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| T |
21433874 |
caaa |
21433877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 128 - 263
Target Start/End: Original strand, 27152644 - 27152780
Alignment:
| Q |
128 |
gactgatatgaaggagaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaa-aggtgagtgcgctgctagtttc |
226 |
Q |
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|||||| |||||| |||||||||||||| |||||||||||||| ||||| || |||||||||||||||| |||| |||||||||| ||||||||||| |
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| T |
27152644 |
gactgaaatgaagcagaaggatctgaatgttgtgttggggacaaaaagtgtaataataattcttgatgataaaaaaaaaggtgagtgcactgctagtttc |
27152743 |
T |
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| Q |
227 |
tgacttgttttttctgaattatgtaattggaatggtt |
263 |
Q |
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||| | |||||||||||||||| |||||||||||||| |
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| T |
27152744 |
tgattggttttttctgaattatctaattggaatggtt |
27152780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 143 - 259
Target Start/End: Complemental strand, 27075610 - 27075494
Alignment:
| Q |
143 |
gaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaaaggtgagtgcgctgctagtttctgacttgttttttctg |
242 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| || |||||||||| ||||||||||||||||||||||| | | |
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| T |
27075610 |
gaaggatctggatcttgtgttggggacagaaaattctatcttaattcttgatgataaagaagaggtgagtgcactgctagtttctgacttgtttttgcgg |
27075511 |
T |
|
| Q |
243 |
aattatgtaattggaat |
259 |
Q |
| |
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|||| | ||||| |||| |
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| T |
27075510 |
aattgtttaattagaat |
27075494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 143 - 226
Target Start/End: Original strand, 27028509 - 27028592
Alignment:
| Q |
143 |
gaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaaaggtgagtgcgctgctagtttc |
226 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| || |||||||||| ||||||||||| |
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| T |
27028509 |
gaaggatctggatcttgtgttggggacagaaaattctatcttaattcttgatgataaagaagaggtgagtgcactgctagtttc |
27028592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 26989694 - 26989761
Alignment:
| Q |
147 |
gatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaaaggtgagtgc |
214 |
Q |
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| T |
26989694 |
gatctggatcttgtgttggggacagaaaattctatcataattcttgatgacaaagaagaggtgagtgc |
26989761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 34691769 - 34691836
Alignment:
| Q |
147 |
gatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaaaggtgagtgc |
214 |
Q |
| |
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|||||| ||||||||||||||||||||| ||||||| ||||||||||||| || || |||||||||| |
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| T |
34691769 |
gatctggatcttgtgttggggacagaaaattctatcgtaattcttgatgacaaagaagaggtgagtgc |
34691836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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