View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_6 (Length: 573)

Name: NF0784_low_6
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_6
NF0784_low_6
[»] chr7 (28 HSPs)
chr7 (71-452)||(21785771-21786152)
chr7 (71-418)||(21647112-21647460)
chr7 (71-353)||(21623558-21623840)
chr7 (71-278)||(21682015-21682222)
chr7 (71-243)||(21788594-21788763)
chr7 (71-243)||(21772326-21772498)
chr7 (71-217)||(21992547-21992693)
chr7 (71-243)||(21714548-21714720)
chr7 (71-243)||(21726261-21726433)
chr7 (355-452)||(21714730-21714827)
chr7 (71-196)||(21764409-21764531)
chr7 (80-196)||(21628502-21628618)
chr7 (79-197)||(15713990-15714108)
chr7 (80-171)||(21664481-21664572)
chr7 (80-196)||(21689787-21689903)
chr7 (356-444)||(21788774-21788862)
chr7 (80-196)||(21807820-21807936)
chr7 (76-171)||(21705007-21705102)
chr7 (104-187)||(21792388-21792471)
chr7 (107-188)||(21652461-21652542)
chr7 (76-196)||(21745896-21746016)
chr7 (355-400)||(21772508-21772553)
chr7 (359-444)||(15714168-15714259)
chr7 (151-196)||(21656896-21656941)
chr7 (397-444)||(21705199-21705246)
chr7 (396-444)||(21664683-21664731)
chr7 (389-444)||(21764601-21764659)
chr7 (388-444)||(21792549-21792605)
[»] scaffold0182 (2 HSPs)
scaffold0182 (74-195)||(25741-25862)
scaffold0182 (355-418)||(25905-25968)


Alignment Details
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 71 - 452
Target Start/End: Original strand, 21785771 - 21786152
Alignment:
Q  71 ggcaaatgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaa 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    || ||||| |||||||||||    
T  21785771 ggcaaatgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttatgaagtcctcaaactattgtggaa 21785870  T
Q  171 acacgacaacgagagtgaattgataatgaccatgaaaaatttcctcaaatgtcatcattgggccacaccagataataagaggaattggaggtggctacgc 270  Q
    | |   | ||||||||||||||||||  | |||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||  || ||||    
T  21785871 agatagcgacgagagtgaattgataaaaagcatgaagaatttcctcaaatgtcatcattgggccacaccagataataagaggaacaggaggaagcgacgc 21785970  T
Q  271 aatcaagagactggcaatttagttccaaacagaaaaggaaaagaacaacatagtgtattgataacgaatgagtcagagacaccatcagagaaggagaagg 370  Q
    |||||||||||| ||||| |||||||| ||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21785971 aatcaagagactagcaatatagttccagacaaaacaggaaaagaacaacatagcgtattgataacgaatgagtcagagacaccatcagagaaggagaagg 21786070  T
Q  371 acatggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatct 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21786071 acatggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatct 21786152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 71 - 418
Target Start/End: Original strand, 21647112 - 21647460
Alignment:
Q  71 ggcaaatgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaa 170  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| | |||    
T  21647112 ggcagatgaatattaaggttgataaactggttcttgtgatgatggatgtgcttttgttggagaatcaactcccttacatagtactcaaactattattgaa 21647211  T
Q  171 acacgacaacgagagtgaattgataatgaccatgaaaaatttcctcaaatgtcatcattgggccacaccagataataagaggaattggaggtggctacgc 270  Q
    | |  |||| |||| |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||| |  |    
T  21647212 agataacaatgagaatgaattgataaataccatgaaaaatttcctcaaatgtcatcattggaccacaccagataataagaggaaccggaggtggcgagac 21647311  T
Q  271 aatcaagagactggcaatttagttccaaacagaaaaggaaaagaacaacatagt---gtattgataacgaatgagtcagagacaccatcagagaaggaga 367  Q
    | |||| ||| | ||||| | |||    |||| |||||||||||||||||||||   |||||||| ||||||||||  |||||| ||||| |||||||||    
T  21647312 attcaaaagattagcaatatggtt--ggacagtaaaggaaaagaacaacatagtaccgtattgattacgaatgagttggagacatcatcaaagaaggaga 21647409  T
Q  368 aggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatac 418  Q
    |||| |||||| ||||| ||||||||||||||||||| ||| |||||||||    
T  21647410 aggaaatggtttcaaaaggaaaaggagaaggagaacacagtgtatcaatac 21647460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 71 - 353
Target Start/End: Original strand, 21623558 - 21623840
Alignment:
Q  71 ggcaaatgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaa 170  Q
    |||| |||||||||||| ||||||||| |  |||||||||||| |||||| ||||||||||||||||||| |||||    ||||||||||||||||||||    
T  21623558 ggcagatgaatattaagcttgatcaacggaatcttgtgatgattgatgtggttttgttggagaatcaactgccttatgaagtactcaagctattgtggaa 21623657  T
Q  171 acacgacaacgagagtgaattgataatgaccatgaaaaatttcctcaaatgtcatcattgggccacaccagataataagaggaattggaggtggctacgc 270  Q
    | |  ||||||||| |||||||||||||||||||||||||||||||   ||||||| |||||||||||||||||||||||||||   |||||||| ||||    
T  21623658 agataacaacgagaatgaattgataatgaccatgaaaaatttcctcggctgtcatctttgggccacaccagataataagaggaaccagaggtggcgacgc 21623757  T
Q  271 aatcaagagactggcaatttagttccaaacagaaaaggaaaagaacaacatagtgtattgataacgaatgagtcagagacacc 353  Q
    |||||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||| |||| |||||| |||||||||||    
T  21623758 aatcaagagactagcaatatggttccagacagaaaaggaaaagaacaacatagtgtattaataatgaatgaatcagagacacc 21623840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 71 - 278
Target Start/End: Original strand, 21682015 - 21682222
Alignment:
Q  71 ggcaaatgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaa 170  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  21682015 ggcacatgaatgttaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttatcaagtactcaagctattgtggaa 21682114  T
Q  171 acacgacaacgagagtgaattgataatgaccatgaaaaatttcctcaaatgtcatcattgggccacaccagataataagaggaattggaggtggctacgc 270  Q
    | |   ||| ||||||||||||||||  |  ||||  ||||||||| | ||||||||||||||||||| |||||||||||| |   ||||||||| || |    
T  21682115 agatagcaatgagagtgaattgataaaaattatgacgaatttcctcgactgtcatcattgggccacactagataataagagaagccggaggtggcaactc 21682214  T
Q  271 aatcaaga 278  Q
    ||||||||    
T  21682215 aatcaaga 21682222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 21788594 - 21788763
Alignment:
Q  71 ggcaaatgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaa 170  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  21788594 ggcacatgaatattaaagttgatcaactggttcttgtgatgatggatgtgcttctgttggagaatcaacttccttacgtagtactcaagctattgtggaa 21788693  T
Q  171 acacgacaacgagagtgaattgataatgaccatgaaaaatttcctcaaatgtcatcattgggccacaccagat 243  Q
    |   || ||||| |||||||||||||  | |||||  | ||||||| | ||||||||||||||||||||||||    
T  21788694 a---gataacgatagtgaattgataaaaagcatgatgactttcctcgactgtcatcattgggccacaccagat 21788763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 21772326 - 21772498
Alignment:
Q  71 ggcaaatgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaa 170  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  21772326 ggcacatgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttatcaagtactcaagctattgtggaa 21772425  T
Q  171 acacgacaacgagagtgaattgataatgaccatgaaaaatttcctcaaatgtcatcattgggccacaccagat 243  Q
    | | ||  |||||||||  ||||||   | |||||  ||||||||| | ||||||||||||||||||||||||    
T  21772426 agatgaagacgagagtggcttgatagaaagcatgatgaatttcctcgactgtcatcattgggccacaccagat 21772498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 71 - 217
Target Start/End: Original strand, 21992547 - 21992693
Alignment:
Q  71 ggcaaatgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaa 170  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||||    
T  21992547 ggcacatgaatattaaagttgatcaactggttcttgtgatgatggatgtgcttctgttggagaatcaacttccttacgtagtactcaagctattgtggaa 21992646  T
Q  171 acacgacaacgagagtgaattgataatgaccatgaaaaatttcctca 217  Q
    | |  |||| ||||||||||||||||  | ||||||||  |||||||    
T  21992647 agataacaatgagagtgaattgataaaaagcatgaaaatgttcctca 21992693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 21714548 - 21714720
Alignment:
Q  71 ggcaaatgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaa 170  Q
    ||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  21714548 ggcaaatgaatatcaaggttgatcaacttgttcttgtaatgatggatgtgcttttgttggagaatcaacttccttatcaagtactcaagctattgtggaa 21714647  T
Q  171 acacgacaacgagagtgaattgataatgaccatgaaaaatttcctcaaatgtcatcattgggccacaccagat 243  Q
    | | ||  || |||||| ||||||||  | |||||  |||||||||   ||||||||||||||||||||||||    
T  21714648 agatgaagaccagagtggattgataaaaagcatgatgaatttcctcgcctgtcatcattgggccacaccagat 21714720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 71 - 243
Target Start/End: Original strand, 21726261 - 21726433
Alignment:
Q  71 ggcaaatgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaa 170  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||     
T  21726261 ggcacatgaatattagggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttatcaagtactcaagctattgtggac 21726360  T
Q  171 acacgacaacgagagtgaattgataatgaccatgaaaaatttcctcaaatgtcatcattgggccacaccagat 243  Q
    | | ||  ||||||||| |||||||   | |||||  |||||| || |  |||||||||||||||||||||||    
T  21726361 agatgaagacgagagtggattgatagaaagcatgatgaatttcgtcgacggtcatcattgggccacaccagat 21726433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 355 - 452
Target Start/End: Original strand, 21714730 - 21714827
Alignment:
Q  355 tcagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccctttcatct 452  Q
    ||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21714730 tcagagaagaagaaggacatggttccaaaaagaaaagcagaaagagagcatagtttatcaatacgaaatgagtcacagttagagacaccctttcatct 21714827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 71 - 196
Target Start/End: Original strand, 21764409 - 21764531
Alignment:
Q  71 ggcaaatgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaa 170  Q
    |||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  21764409 ggcacatgaagattaaggttggtcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacgaagtactcaagctattgtggaa 21764508  T
Q  171 acacgacaacgagagtgaattgataa 196  Q
    |    | |||||||||||||||||||    
T  21764509 a---aataacgagagtgaattgataa 21764531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 21628502 - 21628618
Alignment:
Q  80 atattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaaacacgacaa 179  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||| |  ||||    
T  21628502 atattaagcttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttatgaagtactcaagctattgtggaaagataacaa 21628601  T
Q  180 cgagagtgaattgataa 196  Q
     |||| |||||||||||    
T  21628602 tgagaatgaattgataa 21628618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 15713990 - 15714108
Alignment:
Q  79 aatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaaacacgaca 178  Q
    ||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    ||||||||||||||||||||| |  |||    
T  15713990 aatattaagcttgatcaactggatcttgtgataatggatgtgcttttgttggagaatcaacttccttatgaagtactcaagctattgtggaaagataaca 15714089  T
Q  179 acgagagtgaattgataat 197  Q
    |||||||||| ||||||||    
T  15714090 acgagagtgagttgataat 15714108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 21664481 - 21664572
Alignment:
Q  80 atattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    |||||||||||||||||||||    
T  21664481 atattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaactaccttatcaagtactcaagctattgtggaaa 21664572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 21689787 - 21689903
Alignment:
Q  80 atattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaaacacgacaa 179  Q
    ||||||||||||||||||| | | |||||||| |||||||||||||||| |||||||||||||||||    |||||| |||||||||||||| |  ||||    
T  21689787 atattaaggttgatcaactagctattgtgatggtggatgtgcttttgttagagaatcaacttccttatgaagtactcgagctattgtggaaagataacaa 21689886  T
Q  180 cgagagtgaattgataa 196  Q
    | |||||||||||||||    
T  21689887 caagagtgaattgataa 21689903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 356 - 444
Target Start/End: Original strand, 21788774 - 21788862
Alignment:
Q  356 cagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccc 444  Q
    |||| |||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||  ||||||||| |||||||||||||||    
T  21788774 cagataaggagaaggacatggttccaaaaggaaagggagaaggagaacatagtgtatcaataacaaatgagtcccagttagagacaccc 21788862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 80 - 196
Target Start/End: Complemental strand, 21807936 - 21807820
Alignment:
Q  80 atattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaaacacgacaa 179  Q
    |||||||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||| ||||| |  ||||| |||||||||||| || |  ||||    
T  21807936 atattaagcttgatcaactggttcttctgataacggatgtgcttttgttggagaatcaactgccttataaagtacttaagctattgtgggaagataacaa 21807837  T
Q  180 cgagagtgaattgataa 196  Q
     ||| ||||||||||||    
T  21807836 tgagggtgaattgataa 21807820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 76 - 171
Target Start/End: Original strand, 21705007 - 21705102
Alignment:
Q  76 atgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaaa 171  Q
    ||||||||||||||||||||||||| |||||||| |  ||||||||||||||||||||||||||| |||||    ||||||||||| |||||||||    
T  21705007 atgaatattaaggttgatcaactggctcttgtgagggaggatgtgcttttgttggagaatcaactgccttatgaagtactcaagcttttgtggaaa 21705102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 104 - 187
Target Start/End: Original strand, 21792388 - 21792471
Alignment:
Q  104 ttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaaacacgacaacgagagtg 187  Q
    ||||||||||||||||||||||||||||||||||||| |||||    ||||||||||||||||||||| |||||||| ||||||    
T  21792388 ttgtgatgatggatgtgcttttgttggagaatcaactgccttatgaagtactcaagctattgtggaaagacgacaaccagagtg 21792471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 107 - 188
Target Start/End: Original strand, 21652461 - 21652542
Alignment:
Q  107 tgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaaacacgacaacgagagtga 188  Q
    ||||||||||||||||||||||||| ||||||||||||||    ||||||||||| ||||||||| ||||||||||||||||    
T  21652461 tgatgatggatgtgcttttgttggaaaatcaacttccttatcaagtactcaagcttttgtggaaagacgacaacgagagtga 21652542  T

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Target: chr7; HSP #21
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 76 - 196
Target Start/End: Original strand, 21745896 - 21746016
Alignment:
Q  76 atgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaaacacg 175  Q
    |||||||||||| |||||| | |  ||||||||||||| ||||| |||||||||||||||||||| |||||    |||||| |||||||||| ||| |      
T  21745896 atgaatattaagcttgatctagttattcttgtgatgatcgatgtacttttgttggagaatcaactgccttatgaagtactctagctattgtgaaaagata 21745995  T
Q  176 acaacgagagtgaattgataa 196  Q
    |||||||||||||||||||||    
T  21745996 acaacgagagtgaattgataa 21746016  T

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Target: chr7; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 400
Target Start/End: Original strand, 21772508 - 21772553
Alignment:
Q  355 tcagagaaggagaaggacatggttccaaaaagaaaaggagaaggag 400  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||    
T  21772508 tcagggaagaagaaggacatggttccaaaaagaaaaggagaaggag 21772553  T

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Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 444
Target Start/End: Original strand, 15714168 - 15714259
Alignment:
Q  359 agaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaa------tacgaaatgagtcacagttagagacaccc 444  Q
    ||||||||||| ||  ||||||||| ||||||||||||||| || ||||| ||||||      |||||||||||||||||| ||||||||||    
T  15714168 agaaggagaagaacggggttccaaacagaaaaggagaaggacaatatagtgtatcaataccattacgaaatgagtcacagtcagagacaccc 15714259  T

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Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 21656896 - 21656941
Alignment:
Q  151 gtactcaagctattgtggaaacacgacaacgagagtgaattgataa 196  Q
    ||||||||||||||||||||| | |||||| |||||||||||||||    
T  21656896 gtactcaagctattgtggaaagatgacaacaagagtgaattgataa 21656941  T

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Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 444
Target Start/End: Original strand, 21705199 - 21705246
Alignment:
Q  397 ggagaacatagtttatcaatacgaaatgagtcacagttagagacaccc 444  Q
    |||||||||||| ||||||||| |||||||||||||| ||| ||||||    
T  21705199 ggagaacatagtgtatcaataccaaatgagtcacagtcagaaacaccc 21705246  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 444
Target Start/End: Original strand, 21664683 - 21664731
Alignment:
Q  396 aggagaacatagtttatcaatacgaaatgagtcacagttagagacaccc 444  Q
    ||||||||||| | ||||||||| ||||||||||||| | |||||||||    
T  21664683 aggagaacatattgtatcaatactaaatgagtcacagctggagacaccc 21664731  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 389 - 444
Target Start/End: Original strand, 21764601 - 21764659
Alignment:
Q  389 aaggagaaggagaacatagtttatc---aatacgaaatgagtcacagttagagacaccc 444  Q
    |||||||||||||||||||| ||||   ||||  |||||||||||||| ||||||||||    
T  21764601 aaggagaaggagaacatagtgtatcaataataacaaatgagtcacagtcagagacaccc 21764659  T

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Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 444
Target Start/End: Original strand, 21792549 - 21792605
Alignment:
Q  388 aaaggagaaggagaacatagtttatcaatacgaaatgagtcacagttagagacaccc 444  Q
    |||||||||||| |||||||| ||||||| | | ||||||||| ||||||| |||||    
T  21792549 aaaggagaaggacaacatagtgtatcaatgccagatgagtcactgttagagccaccc 21792605  T

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Target: scaffold0182 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 74 - 195
Target Start/End: Original strand, 25741 - 25862
Alignment:
Q  74 aaatgaatattaaggttgatcaactggttcttgtgatgatggatgtgcttttgttggagaatcaacttccttacatggtactcaagctattgtggaaaca 173  Q
    |||||||||||||||||||||||||  ||||||||||| |||||||| |||||||||| ||||||||||||||    ||||||||||||||||||||| |    
T  25741 aaatgaatattaaggttgatcaactttttcttgtgatggtggatgtggttttgttggaaaatcaacttccttatgaagtactcaagctattgtggaaaaa 25840  T
Q  174 cgacaacgagagtgaattgata 195  Q
    ||| || |||||||||||||||    
T  25841 cgagaatgagagtgaattgata 25862  T

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Target: scaffold0182; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 418
Target Start/End: Original strand, 25905 - 25968
Alignment:
Q  355 tcagagaaggagaaggacatggttccaaaaagaaaaggagaaggagaacatagtttatcaatac 418  Q
    |||||||||||||||||||||| |||||| | ||| |||||||||||| ||||| |||||||||    
T  25905 tcagagaaggagaaggacatgggtccaaagaaaaacggagaaggagaatatagtgtatcaatac 25968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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