View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_60 (Length: 340)

Name: NF0784_low_60
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_60
NF0784_low_60
[»] chr1 (4 HSPs)
chr1 (30-315)||(8425134-8425419)
chr1 (130-315)||(30234221-30234406)
chr1 (86-131)||(30235004-30235049)
chr1 (30-89)||(30235361-30235420)
[»] chr5 (3 HSPs)
chr5 (30-315)||(22475948-22476237)
chr5 (196-315)||(26842255-26842378)
chr5 (92-172)||(26849095-26849175)
[»] chr3 (2 HSPs)
chr3 (30-315)||(1530477-1530766)
chr3 (30-120)||(26797826-26797915)
[»] chr7 (3 HSPs)
chr7 (130-271)||(39327811-39327952)
chr7 (86-131)||(39327668-39327713)
chr7 (86-131)||(39718781-39718826)
[»] chr2 (2 HSPs)
chr2 (86-131)||(29758696-29758741)
chr2 (30-89)||(29759042-29759101)
[»] chr4 (2 HSPs)
chr4 (30-89)||(5690107-5690166)
chr4 (88-131)||(25153751-25153794)
[»] chr8 (1 HSPs)
chr8 (30-120)||(8396728-8396817)


Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 30 - 315
Target Start/End: Complemental strand, 8425419 - 8425134
Alignment:
Q  30 gcaatcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacaccagcattat 129  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8425419 gcaatcctaggccaaagatcagcacactccttaccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacaccagcattat 8425320  T
Q  130 cttcgaagtacatgaagacaccatcctttgggcgccaaggcttgcactggcgaacgatggcagctggcaaaaccttcttcctgagatcaggttttccctt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8425319 cttcgaagtacatgaagacaccatcctttgggcgccaaggcttgcactgacgaacgatgacagctggcaaaaccttcttcctgagatcaggttttccctt 8425220  T
Q  230 cttcatagtagccatcaccatgtcaccaacacaagctgaaggaagacgattcaagctacctttgattcccttcacggagatgatgt 315  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8425219 ctacatagtagccatcaccatgtcaccaacacaagctgaaggaagacgattcaacctacctttgattcccttcacggagatgatgt 8425134  T

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Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 130 - 315
Target Start/End: Complemental strand, 30234406 - 30234221
Alignment:
Q  130 cttcgaagtacatgaagacaccatcctttgggcgccaaggcttgcactggcgaacgatggcagctggcaaaaccttcttcctgagatcaggttttccctt 229  Q
    |||| ||||||||||||||||| |||||| ||||||| ||||| | ||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  30234406 cttcaaagtacatgaagacaccgtcctttcggcgccatggcttacgctgacgaacgatgacagctggcaaaaccttcttcctgagatcaggctttccctt 30234307  T
Q  230 cttcatagtagccatcaccatgtcaccaacacaagctgaaggaagacgattcaagctacctttgattcccttcacggagatgatgt 315  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  30234306 cttcacagtagccatcaccatgtcaccagcacaagctgaaggaagacgattcaacctacccttgattcccttcacggagatgatgt 30234221  T

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Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 30235049 - 30235004
Alignment:
Q  86 acctttcatttctcccttaggattcacaataacaccagcattatct 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  30235049 acctttcatttctcccttaggattcacaataacaccagcattatct 30235004  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 30235420 - 30235361
Alignment:
Q  30 gcaatcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacct 89  Q
    ||||||||||||||||||||| ||||  ||||| ||||||| || |||||||||||||||    
T  30235420 gcaatcctaggccaaagatcagcacattccttagcaattggaccggtgatagcagaacct 30235361  T

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Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 30 - 315
Target Start/End: Original strand, 22475948 - 22476237
Alignment:
Q  30 gcaatcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacaccagcattat 129  Q
    |||||| |||||||||| ||| ||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  22475948 gcaatcataggccaaagctcagcacactcgttgccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacgccggcattat 22476047  T
Q  130 cttcgaagtacatgaagacaccatcctttgggcgccaaggcttgcactggcgaacgatggcagctggcaaaaccttcttcctgagatcaggttttccctt 229  Q
    ||| ||||||||||||||||| ||| ||| ||||||||||||| | ||| ||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  22476048 ctttgaagtacatgaagacacaatcattttggcgccaaggcttacgctgacgaacgatgacaactggcaaaaccttcttcatgagatcaggttttccctt 22476147  T
Q  230 cttcatagtagcc----atcaccatgtcaccaacacaagctgaaggaagacgattcaagctacctttgattcccttcacggagatgatgt 315  Q
    ||||| |||||||    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||    
T  22476148 cttcacagtagccatcaatcaccatgtcaccaacacaagctgaaggaagacgattcaatctacccttgattcccttcacagagatgatgt 22476237  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 196 - 315
Target Start/End: Complemental strand, 26842378 - 26842255
Alignment:
Q  196 gcaaaaccttcttcctgagatcaggttttcccttcttcatagtagccatca----ccatgtcaccaacacaagctgaaggaagacgattcaagctacctt 291  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||    ||||||||||||||||||||||||||||||||||||| ||||| |    
T  26842378 gcaaaaccttcttcctgagatcaggtattcccttcttcacagtagccatcaatcaccatgtcaccaacacaagctgaaggaagacgattcaatctaccct 26842279  T
Q  292 tgattcccttcacggagatgatgt 315  Q
    ||||||||||||||||||||||||    
T  26842278 tgattcccttcacggagatgatgt 26842255  T

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Target: chr5; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 26849175 - 26849095
Alignment:
Q  92 catttctcccttaggattcacaataacaccagcattatcttcgaagtacatgaagacaccatcctttgggcgccaaggctt 172  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||| |||| ||||||||    
T  26849175 catttctcccttaggattcacaataacgccggcattatcttcgaagtacatgaagacacaatccttttggcgtcaaggctt 26849095  T

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Target: chr3 (Bit Score: 181; Significance: 9e-98; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 30 - 315
Target Start/End: Complemental strand, 1530766 - 1530477
Alignment:
Q  30 gcaatcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacaccagcattat 129  Q
    |||||| |||||||||| ||| ||||| | |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||  ||  ||||||    
T  1530766 gcaatcataggccaaagctcagcacactcgttaccaattggtccagtgatagcataatctttcatttctcccttaggattcacaataatgccgtcattat 1530667  T
Q  130 cttcgaagtacatgaagacaccatcctttgggcgccaaggcttgcactggcgaacgatggcagctggcaaaaccttcttcctgagatcaggttttccctt 229  Q
    ||| ||||||||||||||||| ||||||| ||||||||||||| | ||| ||||||||| || ||||||||||||||||||||||||||||||| |||||    
T  1530666 ctttgaagtacatgaagacacgatccttttggcgccaaggcttacgctgacgaacgatgacaactggcaaaaccttcttcctgagatcaggtttcccctt 1530567  T
Q  230 cttcatagtagcc----atcaccatgtcaccaacacaagctgaaggaagacgattcaagctacctttgattcccttcacggagatgatgt 315  Q
    ||||| |||||||    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||    
T  1530566 cttcacagtagccatcaatcaccatgtcaccaacacaagctgaaggaagacgattcaatctacccttgattcccttcacggagatgatgt 1530477  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 26797826 - 26797915
Alignment:
Q  30 gcaatcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacac 120  Q
    |||||||||| ||| | |||| ||||| |||| |||||||| ||| | |||||||| |||||||||||| |||| ||||| ||||||||||    
T  26797826 gcaatcctagaccataaatcagcacactccttcccaattggaccactaatagcagaccctttcatttct-cctttggattaacaataacac 26797915  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 130 - 271
Target Start/End: Original strand, 39327811 - 39327952
Alignment:
Q  130 cttcgaagtacatgaagacaccatcctttgggcgccaaggcttgcactggcgaacgatggcagctggcaaaaccttcttcctgagatcaggttttccctt 229  Q
    |||||||||||||||| ||||| |||||| ||||||| || || | ||| ||||||||| | || || |  |||||||| | ||||||||| ||||||||    
T  39327811 cttcgaagtacatgaaaacaccgtcctttcggcgccatggtttacgctgacgaacgatgacggcaggaagcaccttcttacggagatcaggctttccctt 39327910  T
Q  230 cttcatagtagccatcaccatgtcaccaacacaagctgaagg 271  Q
    |||||  || |||||||||||||||||| | |||||||||||    
T  39327911 cttcacggtggccatcaccatgtcaccagcgcaagctgaagg 39327952  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 39327668 - 39327713
Alignment:
Q  86 acctttcatttctcccttaggattcacaataacaccagcattatct 131  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||    
T  39327668 acctttcatttctcctttgggattaacaataacaccagcattatct 39327713  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 39718781 - 39718826
Alignment:
Q  86 acctttcatttctcccttaggattcacaataacaccagcattatct 131  Q
    |||||| |||||||| || ||||| |||||||||||||||||||||    
T  39718781 accttttatttctcctttgggattaacaataacaccagcattatct 39718826  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 29758741 - 29758696
Alignment:
Q  86 acctttcatttctcccttaggattcacaataacaccagcattatct 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  29758741 acctttcatttctcccttaggattcacaataacaccagcattatct 29758696  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 29759101 - 29759042
Alignment:
Q  30 gcaatcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacct 89  Q
    ||||||||||||||||||||| ||||| |||| ||||||||||| |||||| | ||||||    
T  29759101 gcaatcctaggccaaagatcagcacactcctttccaattggtcctgtgataacggaacct 29759042  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 5690107 - 5690166
Alignment:
Q  30 gcaatcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacct 89  Q
    ||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||    
T  5690107 gcaatcctaggccaaagatcagcacactccttaccaattggtcctgtgatagcggaacct 5690166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 131
Target Start/End: Complemental strand, 25153794 - 25153751
Alignment:
Q  88 ctttcatttctcccttaggattcacaataacaccagcattatct 131  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  25153794 ctttcatttctcccttaggattaacaataacaccagaattatct 25153751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 8396728 - 8396817
Alignment:
Q  30 gcaatcctaggccaaagatcaacacaccccttaccaattggtccagtgatagcagaacctttcatttctcccttaggattcacaataacac 120  Q
    |||||||||| ||| | |||| ||||| |||| |||||| | ||||| |||| ||| |||||||||||| |||| ||||| ||||||||||    
T  8396728 gcaatcctagaccataaatcagcacactccttcccaattcgaccagtaatagtagaccctttcatttct-cctttggattaacaataacac 8396817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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