View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_72 (Length: 319)

Name: NF0784_low_72
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_72
NF0784_low_72
[»] chr3 (2 HSPs)
chr3 (149-259)||(43665084-43665194)
chr3 (93-129)||(43665221-43665257)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 149 - 259
Target Start/End: Complemental strand, 43665194 - 43665084
Alignment:
Q  149 gtaaatgagaaatcattggttcacgataattttatttgactattttacacaatttaaaaaatatgtatatatttgtatnnnnnnnngcgaataaaataaa 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    
T  43665194 gtaaatgagaaatcattggttcacgataattttatttgactattttacacaatttaaaaaatatgtatatatttgtataaaaaaaagcgaataaaataaa 43665095  T
Q  249 tgagagatgag 259  Q
    |||||||||||    
T  43665094 tgagagatgag 43665084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 43665257 - 43665221
Alignment:
Q  93 cacctactgtgatttcaaacatagtattaatcatttc 129  Q
    |||||||||||||||||||||||||||||||||||||    
T  43665257 cacctactgtgatttcaaacatagtattaatcatttc 43665221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University