View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_74 (Length: 317)
Name: NF0784_low_74
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 15814582 - 15814278
Alignment:
| Q |
1 |
gatgagtttgttgattgatcacaatctctatggaggcaaattttatcatttatttccttcaaaaaataattatcatttattgacccaatttggtagactt |
100 |
Q |
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| T |
15814582 |
gatgggtttattgattgatcacaatctctatggagacaaattttatcatttattaccttcaaaaaa-aattatcatttattgacccaatttggtagactt |
15814484 |
T |
|
| Q |
101 |
tccaaacatctatcaacctctgtgatgcatgattttgaaagataacttttttcattgttcatcatgaatgtttttcttcgagtatttt-tcccttctcta |
199 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |
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| T |
15814483 |
tccaaacatctatcaacctctctgatgcatgattttgaaagataacttttttcattgttcatcacgaatgtttttcttcgagtattttgtcccttcttta |
15814384 |
T |
|
| Q |
200 |
tcatgaaaggctnnnnnnnnnnnnctaatgaattttttatgggcatcaaaaaatttagttgagaactttattatgcttatctaggtaattgagtgagcta |
299 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
15814383 |
tcatgaaaggctaaaaaataaaaactaatgaattttttatgggcatcaaaaaatttagttgagaactttattatgcttatctagttaattgagtgagcta |
15814284 |
T |
|
| Q |
300 |
aagaat |
305 |
Q |
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|||||| |
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| T |
15814283 |
aagaat |
15814278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 70 - 211
Target Start/End: Complemental strand, 16072355 - 16072214
Alignment:
| Q |
70 |
ttatcatttattgacccaatttggtagactttccaaacatctatcaacctctgtgatgcatgattttgaaagataacttttttcattgttcatcatgaat |
169 |
Q |
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| T |
16072355 |
ttatcatttcttgacgcaatttggtacattttctaaacgtctatgaacctctgtgatacatgattttgaaagataacttttttca-tgtttaacactaat |
16072257 |
T |
|
| Q |
170 |
gtttttcttcgagtatttt-tcccttctctatcatgaaaggct |
211 |
Q |
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| T |
16072256 |
gtttttcttcgggtattttgtctcttctctatcatgaaaggct |
16072214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 70 - 211
Target Start/End: Complemental strand, 16086008 - 16085866
Alignment:
| Q |
70 |
ttatcatttattgacccaatttggtagactttccaaacatctatcaacctctgtgatgcatgattttgaaagataacttttttcattgttcatcatgaat |
169 |
Q |
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||||||||| |||| |||||||||| |||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
16086008 |
ttatcatttcttgatgcaatttggtacactttctaaatgtttatcaacctttgtgatgcatgattttgaaagataacttttttcatttttcatcactaat |
16085909 |
T |
|
| Q |
170 |
gtttttcttcgagtatttt-tcccttctctatcatgaaaggct |
211 |
Q |
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|
| T |
16085908 |
gtttttcttcaggtattttgtctcttctctattatgaaaggct |
16085866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 302
Target Start/End: Complemental strand, 16085846 - 16085768
Alignment:
| Q |
224 |
ctaatgaattttttatgggcatcaaaaaatttagttgagaactttattatgcttatctaggtaattgagtgagctaaag |
302 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| |||| |||||||||||| | | ||||||||| ||||| |
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| T |
16085846 |
ctaatgaattttttatgggcatcaaaatttttagtcgagatctttcttatgcttatctggtcacttgagtgagttaaag |
16085768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 302
Target Start/End: Complemental strand, 16086449 - 16086371
Alignment:
| Q |
224 |
ctaatgaattttttatgggcatcaaaaaatttagttgagaactttattatgcttatctaggtaattgagtgagctaaag |
302 |
Q |
| |
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||||| ||||||||||||||||||||| |||||| || | |||||||||||||||| | ||||||||| ||||||| |
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| T |
16086449 |
ctaataaattttttatgggcatcaaaatttttagtcgaaatatttattatgcttatctggtcaattgagtgtgctaaag |
16086371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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