View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_77 (Length: 313)
Name: NF0784_low_77
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_77 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 284
Target Start/End: Complemental strand, 934533 - 934277
Alignment:
| Q |
29 |
ctccaacaatatgatagtaattgaaaataaggattgatgaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttataggaaggg |
128 |
Q |
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| T |
934533 |
ctccaactaaatggtagtaattgaagataaagattgaggaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttataggaaggg |
934434 |
T |
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| Q |
129 |
aatagttt-tagatatttgtcggttgtatgcttgaatttcaactggctaccaaatttgacacacttttaataacttcaactgcctgtggtatgtcacatt |
227 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
934433 |
aatagtttctagatatttgtcggttgtatgcttgaatttcaactggctaccaaatttgacacacttttaataacttcaactgcctgtggtatgtcacatt |
934334 |
T |
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| Q |
228 |
aatttcatttgtatttggacggttggtacttggcagagagattcagagagtgtacaa |
284 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
934333 |
aattgcatttgtatttggacggttggtacttggcagagagattcagagagtgtacaa |
934277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 900830 - 900775
Alignment:
| Q |
67 |
gaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttatag |
122 |
Q |
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| T |
900830 |
gaactgaaaacaagatagaatgaagatccctaagtggccttacacatcatttatag |
900775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 908665 - 908606
Alignment:
| Q |
62 |
ttgatgaactgaaagcaagatagaatgaagatccctaagtggccttacacaccatttata |
121 |
Q |
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|||| |||||| ||||||||||||||||||| || ||| ||| || |||||||||||||| |
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| T |
908665 |
ttgaggaactgtaagcaagatagaatgaagacccgtaactggactcacacaccatttata |
908606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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