View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_79 (Length: 308)

Name: NF0784_low_79
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_79
NF0784_low_79
[»] scaffold0634 (1 HSPs)
scaffold0634 (127-308)||(2975-3156)
[»] chr2 (18 HSPs)
chr2 (95-305)||(26583092-26583313)
chr2 (126-306)||(23089594-23089774)
chr2 (98-306)||(23101994-23102202)
chr2 (134-234)||(23878325-23878425)
chr2 (123-238)||(21907750-21907865)
chr2 (167-306)||(23062988-23063127)
chr2 (92-229)||(5706610-5706759)
chr2 (166-308)||(24660879-24661021)
chr2 (136-238)||(29281368-29281470)
chr2 (177-308)||(26884508-26884639)
chr2 (155-262)||(25181501-25181606)
chr2 (89-187)||(23264515-23264613)
chr2 (136-229)||(9957-10050)
chr2 (199-308)||(23168954-23169063)
chr2 (199-308)||(23580211-23580320)
chr2 (166-238)||(27208322-27208394)
chr2 (166-238)||(27210657-27210729)
chr2 (198-303)||(23264419-23264524)
[»] chr6 (21 HSPs)
chr6 (95-305)||(29614738-29614956)
chr6 (128-306)||(18799754-18799932)
chr6 (126-306)||(21565751-21565931)
chr6 (92-276)||(12167637-12167832)
chr6 (92-276)||(19286546-19286741)
chr6 (123-308)||(25396486-25396671)
chr6 (136-276)||(19877730-19877870)
chr6 (92-276)||(19883506-19883701)
chr6 (155-276)||(19786529-19786650)
chr6 (92-229)||(34640575-34640724)
chr6 (92-229)||(34647249-34647398)
chr6 (134-303)||(19471914-19472082)
chr6 (126-308)||(19300308-19300490)
chr6 (92-187)||(24513370-24513465)
chr6 (136-229)||(20008529-20008622)
chr6 (92-238)||(25470290-25470448)
chr6 (94-216)||(21365067-21365200)
chr6 (94-216)||(23969049-23969182)
chr6 (92-143)||(19786455-19786506)
chr6 (94-143)||(19877874-19877923)
chr6 (198-261)||(9186841-9186903)
[»] scaffold0247 (1 HSPs)
scaffold0247 (92-306)||(10615-10829)
[»] scaffold0026 (2 HSPs)
scaffold0026 (198-308)||(12534-12644)
scaffold0026 (92-187)||(12437-12543)
[»] chr7 (22 HSPs)
chr7 (136-305)||(13742955-13743121)
chr7 (89-306)||(16676628-16676845)
chr7 (89-306)||(17650864-17651081)
chr7 (95-277)||(13123506-13123698)
chr7 (145-277)||(12710496-12710627)
chr7 (92-276)||(13006706-13006901)
chr7 (128-238)||(11389910-11390020)
chr7 (134-212)||(20311631-20311709)
chr7 (167-305)||(46625265-46625403)
chr7 (167-303)||(13678770-13678906)
chr7 (92-227)||(12591230-12591377)
chr7 (146-261)||(11383440-11383554)
chr7 (136-238)||(16090457-16090559)
chr7 (166-238)||(14320243-14320315)
chr7 (123-212)||(21231554-21231643)
chr7 (136-216)||(2464758-2464838)
chr7 (136-216)||(3858007-3858087)
chr7 (94-143)||(3857953-3858003)
chr7 (136-226)||(29181690-29181780)
chr7 (145-193)||(2966383-2966431)
chr7 (95-143)||(12710435-12710483)
chr7 (145-193)||(20907038-20907086)
[»] scaffold0154 (1 HSPs)
scaffold0154 (127-308)||(30202-30383)
[»] scaffold1773 (1 HSPs)
scaffold1773 (136-277)||(452-592)
[»] scaffold0456 (4 HSPs)
scaffold0456 (198-301)||(305-407)
scaffold0456 (198-301)||(7450-7552)
scaffold0456 (92-176)||(409-504)
scaffold0456 (92-176)||(7554-7649)
[»] chr4 (12 HSPs)
chr4 (92-277)||(8046420-8046616)
chr4 (89-212)||(15407485-15407608)
chr4 (126-228)||(14486052-14486154)
chr4 (92-229)||(53483022-53483171)
chr4 (177-262)||(11847453-11847537)
chr4 (136-238)||(16147412-16147514)
chr4 (145-262)||(27905613-27905729)
chr4 (167-259)||(15244566-15244658)
chr4 (266-308)||(14485995-14486037)
chr4 (137-308)||(13887087-13887258)
chr4 (137-308)||(13887944-13888115)
chr4 (167-259)||(15307471-15307563)
[»] scaffold0461 (2 HSPs)
scaffold0461 (89-261)||(581-752)
scaffold0461 (177-261)||(7605-7688)
[»] chr8 (8 HSPs)
chr8 (136-277)||(23865885-23866026)
chr8 (89-212)||(14057148-14057271)
chr8 (89-212)||(25111385-25111508)
chr8 (136-262)||(24321252-24321376)
chr8 (134-303)||(18613529-18613697)
chr8 (142-308)||(21931021-21931187)
chr8 (92-143)||(17054009-17054060)
chr8 (95-143)||(23866030-23866078)
[»] scaffold0004 (2 HSPs)
scaffold0004 (123-308)||(129204-129390)
scaffold0004 (110-303)||(116173-116366)
[»] scaffold0117 (1 HSPs)
scaffold0117 (95-276)||(9167-9358)
[»] scaffold0025 (1 HSPs)
scaffold0025 (95-228)||(14977-15121)
[»] chr3 (13 HSPs)
chr3 (136-276)||(41455741-41455882)
chr3 (98-238)||(55499658-55499798)
chr3 (128-238)||(16802029-16802139)
chr3 (95-228)||(24192274-24192418)
chr3 (147-308)||(13324381-13324542)
chr3 (198-308)||(13302844-13302954)
chr3 (198-308)||(13313520-13313630)
chr3 (136-238)||(14865216-14865319)
chr3 (134-253)||(18914472-18914590)
chr3 (93-142)||(10390034-10390083)
chr3 (93-142)||(10415123-10415172)
chr3 (93-142)||(10421793-10421842)
chr3 (128-193)||(12034007-12034072)
[»] chr1 (10 HSPs)
chr1 (89-261)||(18712098-18712270)
chr1 (136-276)||(41111214-41111354)
chr1 (136-262)||(21710167-21710292)
chr1 (136-262)||(20851714-20851838)
chr1 (136-262)||(21705625-21705749)
chr1 (136-229)||(20858341-20858434)
chr1 (140-308)||(22030333-22030501)
chr1 (177-308)||(19961491-19961622)
chr1 (198-306)||(11157446-11157554)
chr1 (94-143)||(41111358-41111407)
[»] scaffold0138 (1 HSPs)
scaffold0138 (167-308)||(1120-1261)
[»] scaffold0124 (1 HSPs)
scaffold0124 (89-238)||(34861-35010)
[»] chr5 (15 HSPs)
chr5 (92-276)||(23527904-23528099)
chr5 (134-298)||(18408521-18408685)
chr5 (136-216)||(19236294-19236374)
chr5 (128-187)||(22439310-22439369)
chr5 (155-262)||(22460506-22460611)
chr5 (154-262)||(34829432-34829539)
chr5 (136-262)||(22467130-22467254)
chr5 (163-254)||(20781102-20781192)
chr5 (92-142)||(20819639-20819689)
chr5 (92-142)||(20826739-20826789)
chr5 (136-216)||(28889978-28890058)
chr5 (136-216)||(28896682-28896762)
chr5 (136-216)||(28909930-28910010)
chr5 (136-216)||(28931622-28931702)
chr5 (136-216)||(28946325-28946405)
[»] scaffold0235 (2 HSPs)
scaffold0235 (102-261)||(15475-15633)
scaffold0235 (102-238)||(23192-23328)
[»] scaffold0029 (4 HSPs)
scaffold0029 (198-305)||(111178-111284)
scaffold0029 (136-234)||(91783-91881)
scaffold0029 (136-234)||(97509-97607)
scaffold0029 (95-143)||(111330-111378)
[»] scaffold0053 (2 HSPs)
scaffold0053 (167-308)||(81826-81967)
scaffold0053 (136-238)||(80072-80174)
[»] scaffold0310 (1 HSPs)
scaffold0310 (95-212)||(6907-7024)
[»] scaffold0077 (1 HSPs)
scaffold0077 (98-226)||(4153-4281)
[»] scaffold0028 (1 HSPs)
scaffold0028 (123-302)||(65413-65592)
[»] scaffold0222 (1 HSPs)
scaffold0222 (134-298)||(16083-16247)
[»] scaffold0085 (1 HSPs)
scaffold0085 (136-262)||(4253-4377)
[»] scaffold0476 (1 HSPs)
scaffold0476 (134-238)||(3871-3975)
[»] scaffold0090 (1 HSPs)
scaffold0090 (134-285)||(17492-17643)
[»] scaffold0139 (1 HSPs)
scaffold0139 (88-303)||(15521-15735)
[»] scaffold0107 (1 HSPs)
scaffold0107 (89-212)||(41113-41236)
[»] scaffold0031 (2 HSPs)
scaffold0031 (142-308)||(121203-121369)
scaffold0031 (142-308)||(132080-132246)
[»] scaffold0020 (1 HSPs)
scaffold0020 (126-303)||(102489-102666)
[»] scaffold0317 (1 HSPs)
scaffold0317 (167-303)||(663-799)
[»] scaffold0261 (1 HSPs)
scaffold0261 (163-308)||(24178-24323)
[»] scaffold0232 (1 HSPs)
scaffold0232 (204-308)||(19059-19163)
[»] scaffold0034 (1 HSPs)
scaffold0034 (145-262)||(72631-72747)
[»] scaffold0001 (1 HSPs)
scaffold0001 (177-308)||(493650-493781)
[»] scaffold1061 (1 HSPs)
scaffold1061 (198-299)||(1712-1813)
[»] scaffold0094 (1 HSPs)
scaffold0094 (198-303)||(51552-51657)
[»] scaffold0720 (1 HSPs)
scaffold0720 (127-262)||(3831-3966)
[»] scaffold0483 (1 HSPs)
scaffold0483 (177-262)||(11631-11715)
[»] scaffold0206 (1 HSPs)
scaffold0206 (177-238)||(18060-18121)
[»] scaffold0453 (1 HSPs)
scaffold0453 (199-262)||(11196-11258)
[»] scaffold0169 (1 HSPs)
scaffold0169 (267-308)||(6302-6343)
[»] scaffold0023 (2 HSPs)
scaffold0023 (136-193)||(134867-134924)
scaffold0023 (198-262)||(134820-134882)
[»] scaffold0924 (1 HSPs)
scaffold0924 (95-143)||(1343-1391)
[»] scaffold0006 (1 HSPs)
scaffold0006 (95-143)||(49597-49645)


Alignment Details
Target: scaffold0634 (Bit Score: 134; Significance: 9e-70; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 127 - 308
Target Start/End: Complemental strand, 3156 - 2975
Alignment:
Q  127 gttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 226  Q
    ||||||||||||||||  | |||||||  ||||||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  3156 gttcgctcaagcgaactgtgagcgagcgaaacccagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcag 3057  T
Q  227 cctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  3056 cctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgtataacccttgt 2975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 95 - 305
Target Start/End: Complemental strand, 26583313 - 26583092
Alignment:
Q  95 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 183  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||||| ||||||||||||||||    
T  26583313 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgacccgtaagcgagctgaacccagacctactgtaagccggtcgct 26583214  T
Q  184 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 283  Q
    |||| |||||| | |||||||||||||||| || ||||||||||||  || |||| ||||| |||||||| ||||||||||||||||||||||| ||| |    
T  26583213 taagcgaactagccgtcgcttaagcgaagtaagtcttagtcagccttcttctgaacttttgtttcgtgcaggaggggacttcttgagcattctataatat 26583114  T
Q  284 ttcctttaacttgtataaccct 305  Q
    ||| ||||||| ||||||||||    
T  26583113 ttcttttaactagtataaccct 26583092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 306
Target Start/End: Original strand, 23089594 - 23089774
Alignment:
Q  126 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 225  Q
    |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||    
T  23089594 agttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtca 23089693  T
Q  226 gcctctttttgaatttttgcttcgtgcacgaggggacttc-ttgagcattctaaaatgtttcctttaacttgtataaccctt 306  Q
    ||| |||||||||   |||| |||||||  ||| |||  | |||||||||  || ||| |||||| ||||||||||||||||    
T  23089694 gccactttttgaa-cgttgcctcgtgcattaggagacccctttgagcattgaaacatggttccttcaacttgtataaccctt 23089774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 306
Target Start/End: Original strand, 23101994 - 23102202
Alignment:
Q  98 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 197  Q
    |||||||||||  ||||||||||  |  |||||||| ||||||||| |||||||||||||||||||| | |||||||||| || |||||| |||||        
T  23101994 agcgaaaaaccaatttgattctgccaagagttcgcttaagcgaaccgtaagcgagcagaacccagacttactgtaagccgatcacttaagcgaactggac 23102093  T
Q  198 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttc-ttgagcattctaaaatgtttcctttaacttg 296  Q
    ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  ||| |||  | |||||||||  || ||| |||||| ||||||    
T  23102094 gtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggagacccctttgagcattgaaacatggttccttcaacttg 23102192  T
Q  297 tataaccctt 306  Q
    ||||||||||    
T  23102193 tataaccctt 23102202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 23878425 - 23878325
Alignment:
Q  134 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 232  Q
    |||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||    
T  23878425 caagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactt 23878327  T
Q  233 tt 234  Q
    ||    
T  23878326 tt 23878325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 238
Target Start/End: Complemental strand, 21907865 - 21907750
Alignment:
Q  123 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagcctta 221  Q
    ||||||||||| ||||||||| | ||||||| ||||||  || |||||||||||||||||||||| |||||| |  |||||||||||||| ||| |||||    
T  21907865 agaagttcgcttaagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatga-cctta 21907767  T
Q  222 gtcagcctctttttgaa 238  Q
    ||||||| |||||||||    
T  21907766 gtcagccactttttgaa 21907750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 23063127 - 23062988
Alignment:
Q  167 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 265  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||   |||||||||||| |||||||||  ||||| |||||||  |||||| | |     
T  23063127 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagttgaccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcctt 23063029  T
Q  266 ttgagcattctaaaatgtttcctttaacttgtataaccctt 306  Q
    |||||||||  |||||||||| || ||||||||||||||||    
T  23063028 ttgagcatttaaaaatgtttctttcaacttgtataaccctt 23062988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 5706610 - 5706759
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 179  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  5706610 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 5706709  T
Q  180 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 229  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  5706710 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 5706759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 308
Target Start/End: Complemental strand, 24661021 - 24660879
Alignment:
Q  166 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 264  Q
    |||||| ||||||||||||||| || | | | ||||||||||| |||   | ||||||||||| ||||||||| |||| |||||||||| |||||| | |    
T  24661021 ttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcaaagaaggtcttagtcagccactttttgaa-ttttacttcgtgcactaggggatcct 24660923  T
Q  265 cttgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
     ||||||||| ||||||||||| || ||||||||||||| ||||    
T  24660922 tttgagcattttaaaatgtttctttcaacttgtataacctttgt 24660879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 136 - 238
Target Start/End: Complemental strand, 29281470 - 29281368
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 235  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  29281470 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagtcagcctttttct 29281371  T
Q  236 gaa 238  Q
    |||    
T  29281370 gaa 29281368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 26884639 - 26884508
Alignment:
Q  177 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 275  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||||||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  26884639 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctctttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 26884541  T
Q  276 taaaatgtttcctttaacttgtataacccttgt 308  Q
    | ||||||||| |||| |||||||||| |||||    
T  26884540 ttaaatgtttcttttagcttgtataactcttgt 26884508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 25181501 - 25181606
Alignment:
Q  155 gaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 254  Q
    |||||||||||| |||||||| |||||||||||  ||||| | |||||||||||||| ||||  ||||||||||| ||| |||| | |||||||||||||    
T  25181501 gaacccagacctactgtaagctggtcgcttaagcaaactagccgtcgcttaagcgaactgagtgttagtcagcct-tttctgaa-tcttgcttcgtgcac 25181598  T
Q  255 gaggggac 262  Q
     |||||||    
T  25181599 taggggac 25181606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 187
Target Start/End: Complemental strand, 23264613 - 23264515
Alignment:
Q  89 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 187  Q
    ||||| || ||||||||| | |||| ||| ||| ||||||||||||||||||||| | |||||||  ||||| |||  |||||||||||||||||||||    
T  23264613 gaacccgtaagcgaaaaatcattttcattatgtcagaagttcgctcaagcgaaccgttagcgagcgaaaccccgactctctgtaagccggtcgcttaag 23264515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 10050 - 9957
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 229  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | ||||||||||| || ||||  |||| ||||||    
T  10050 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcaaactgagtgttagacagcct 9957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 308
Target Start/End: Original strand, 23168954 - 23169063
Alignment:
Q  199 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 297  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23168954 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23169052  T
Q  298 ataacccttgt 308  Q
    |||||||||||    
T  23169053 ataacccttgt 23169063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 308
Target Start/End: Original strand, 23580211 - 23580320
Alignment:
Q  199 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 297  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23580211 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23580309  T
Q  298 ataacccttgt 308  Q
    |||||||||||    
T  23580310 ataacccttgt 23580320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 27208322 - 27208394
Alignment:
Q  166 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 238  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27208322 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27208394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 27210657 - 27210729
Alignment:
Q  166 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 238  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27210657 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27210729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 23264524 - 23264419
Alignment:
Q  198 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 295  Q
    ||||||||||||||| ||| |||||||||||| ||||||||| ||| || |||||||| |||||| | | ||||||||| | ||||||| | || |||||    
T  23264524 gtcgcttaagcgaagatga-ccttagtcagccactttttgaacttt-gcctcgtgcactaggggatccttttgagcatttttaaatgttcctttcaactt 23264427  T
Q  296 gtataacc 303  Q
    ||||||||    
T  23264426 gtataacc 23264419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 95 - 305
Target Start/End: Original strand, 29614738 - 29614956
Alignment:
Q  95 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 183  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||||| ||||||| ||||||||    
T  29614738 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcaacccgtaagcgagctgaacccagacctactgtaagtcggtcgct 29614837  T
Q  184 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgt 283  Q
    |||| |||||| | |||||||||||||||||||||||||||||||   || |||| ||||| |||||||| ||||| ||||||||||||||||| ||| |    
T  29614838 taagcgaactagccgtcgcttaagcgaagtgagccttagtcagcc---ttctgaacttttgtttcgtgcatgagggaacttcttgagcattctataatat 29614934  T
Q  284 ttcctttaacttgtataaccct 305  Q
    ||||||||||| ||||||||||    
T  29614935 ttcctttaactagtataaccct 29614956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 128 - 306
Target Start/End: Complemental strand, 18799932 - 18799754
Alignment:
Q  128 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 227  Q
    |||||| ||||||||| ||||||||| |||||||||| | |||||||||||||||||||| |||||| | |||||||||||||||| | |||||||||||    
T  18799932 ttcgcttaagcgaaccgtaagcgagcggaacccagacttactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtcaaccttagtcagc 18799833  T
Q  228 ctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataaccctt 306  Q
    | |||||||||  ||||| || ||||  |||||| | | || ||||||| || ||||| | || ||||||||||||||||    
T  18799832 cactttttgaa-ctttgcctcatgcattaggggaccctttttagcattcaaacatgttcctttcaacttgtataaccctt 18799754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 126 - 306
Target Start/End: Original strand, 21565751 - 21565931
Alignment:
Q  126 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 225  Q
    |||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||    
T  21565751 agttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtca 21565850  T
Q  226 gcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataaccctt 306  Q
    ||| |||||||||   |||| |||||||  ||| || | | |||||||||  || ||| |||||| ||||||||||||||||    
T  21565851 gccactttttgaa-cgttgcctcgtgcattaggagacccttttgagcattgaaacatggttccttcaacttgtataaccctt 21565931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 92 - 276
Target Start/End: Complemental strand, 12167832 - 12167637
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 179  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  12167832 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 12167733  T
Q  180 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 276  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  12167732 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 12167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 92 - 276
Target Start/End: Complemental strand, 19286741 - 19286546
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 179  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  19286741 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19286642  T
Q  180 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 276  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19286641 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19286546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 123 - 308
Target Start/End: Complemental strand, 25396671 - 25396486
Alignment:
Q  123 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 222  Q
    |||||||| || ||||||||| | ||||||| ||||||  ||  |||||||| |||||||||||| || | | | ||||||||||||||||  | |||||    
T  25396671 agaagttcacttaagcgaaccgttagcgagcggaaccccaactctctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttag 25396572  T
Q  223 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
    ||| || ||||||||| || ||||| |||||| |||| | | | ||||||||||||||||||||| || ||||||||||||||||||    
T  25396571 tcaaccactttttgaa-ttatgcttagtgcactagggaatccttttgagcattctaaaatgtttctttcaacttgtataacccttgt 25396486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 276
Target Start/End: Complemental strand, 19877870 - 19877730
Alignment:
Q  136 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 234  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| |||     
T  19877870 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttc 19877772  T
Q  235 tgaatttttgcttcgtgcacgaggggacttcttgagcattct 276  Q
    |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19877771 tgaactgttgcttagtgcatgaggggacttcttgagcgttct 19877730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 276
Target Start/End: Complemental strand, 19883701 - 19883506
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 179  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  19883701 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 19883602  T
Q  180 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 276  Q
    |||||||| |||||| | |||||||||||||||||| ||||| | ||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  19883601 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaattagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 19883506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 155 - 276
Target Start/End: Original strand, 19786529 - 19786650
Alignment:
Q  155 gaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgca 253  Q
    ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | ||||||  ||||    
T  19786529 gaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttaatgca 19786627  T
Q  254 cgaggggacttcttgagcattct 276  Q
     ||||||||||||||||| ||||    
T  19786628 tgaggggacttcttgagcgttct 19786650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 34640575 - 34640724
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 179  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  34640575 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34640674  T
Q  180 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 229  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34640675 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34640724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 229
Target Start/End: Original strand, 34647249 - 34647398
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 179  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  34647249 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 34647348  T
Q  180 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 229  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34647349 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34647398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 134 - 303
Target Start/End: Original strand, 19471914 - 19472082
Alignment:
Q  134 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 233  Q
    ||||||| || | ||||||| ||||||  || |||||| ||||||||||||||| || | | |  ||||||||||||||   | ||| ||||||| ||||    
T  19471914 caagcgagccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccatcgcttaagcgaagaaggtctt-gtcagccacttt 19472012  T
Q  234 ttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 303  Q
    ||||||||| ||||||||||| |||||| | | ||||||||| | |||||||||||| |||||||||||||    
T  19472013 ttgaatttt-gcttcgtgcactaggggatccttttgagcattttgaaatgtttccttcaacttgtataacc 19472082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 308
Target Start/End: Original strand, 19300308 - 19300490
Alignment:
Q  126 agttcgctcaagcgaaccctaagcgagc-agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtc 224  Q
    ||||||||| |||||||| | ||||||| |||| ||| || | ||||| || ||||||||||| || ||| |  ||||||||||||  ||||||||||||    
T  19300308 agttcgctcgagcgaaccgtgagcgagcgagaatccaaacttcctgta-gctggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtc 19300406  T
Q  225 agcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
    ||||||| | ||||  |||||||||||||| |||||| | | ||||| ||| | || |||||| |||| ||||||||||||||||    
T  19300407 agcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtatttttaagtgtttcttttagcttgtataacccttgt 19300490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 24513370 - 24513465
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 187  Q
    ||||| ||||||||| | |||| |||||   ||||||||||||||||||||| | ||||||| ||||||| || |||||| |||||||||||||||    
T  24513370 cctgtaagcgaaaaatcattttcattcttccagaagttcgctcaagcgaaccgttagcgagcggaacccaaactttctgtgagccggtcgcttaag 24513465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 20008529 - 20008622
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 229  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | || ||||||||||| ||||  |||| ||||||    
T  20008529 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgttgcttaagcgaactgagtgttagacagcct 20008622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 238
Target Start/End: Original strand, 25470290 - 25470448
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 179  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||| |           |||||| | || |||||| ||| |||||||  |||    
T  25470290 cctgtgagcgaaaaaccattttgattctgtccaaaattcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagaacctactgtaagttggt 25470389  T
Q  180 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 238  Q
    |||||||| ||||||   |||||||||||||||||| ||||||||||||| ||| ||||    
T  25470390 cgcttaagcgaactagacgtcgcttaagcgaagtgaaccttagtcagcctttttctgaa 25470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 21365067 - 21365200
Alignment:
Q  94 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa-----------ccctaagcgagcagaacccagaccttctgtaagccggtcgc 182  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||||           || ||||||| | |||||||||||| |||||||  ||||||    
T  21365067 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 21365166  T
Q  183 ttaagtgaactatctgtcgcttaagcgaagtgag 216  Q
    ||||| || ||| | |||||||||||||| ||||    
T  21365167 ttaagcgagctagccgtcgcttaagcgaactgag 21365200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 216
Target Start/End: Original strand, 23969049 - 23969182
Alignment:
Q  94 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaa-----------ccctaagcgagcagaacccagaccttctgtaagccggtcgc 182  Q
    ||||||||||||||| ||||||||||||   |||||||||||||||||           || ||||||| | |||||||||||| |||||||  ||||||    
T  23969049 tgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgc 23969148  T
Q  183 ttaagtgaactatctgtcgcttaagcgaagtgag 216  Q
    ||||| || ||| | |||||||||||||| ||||    
T  23969149 ttaagcgagctagccgtcgcttaagcgaactgag 23969182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 19786455 - 19786506
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 143  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  19786455 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 19786506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 19877923 - 19877874
Alignment:
Q  94 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 143  Q
    ||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  19877923 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 19877874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 261
Target Start/End: Complemental strand, 9186903 - 9186841
Alignment:
Q  198 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 261  Q
    ||||||||||||||| ||| |||||||||||| |||||||||  |||||||||||||| ||||||    
T  9186903 gtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcttcgtgcactagggga 9186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 92 - 306
Target Start/End: Complemental strand, 10829 - 10615
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaa 191  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||     
T  10829 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccctaagcgagcagaacccagacttactgtaagccggtcgcttaagcgag 10730  T
Q  192 ctatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttg-agcattctaaaatgtttccttt 290  Q
    ||| | ||||||||||||||||    ||||||||||| |||||||||  ||||| |||||||  ||||||   |||| ||||||  || ||||  | |||    
T  10729 ctagccgtcgcttaagcgaagttgatcttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcccttgtagcatttaaacatgtccctttt 10631  T
Q  291 aacttgtataaccctt 306  Q
    ||||||||||||||||    
T  10630 aacttgtataaccctt 10615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 198 - 308
Target Start/End: Original strand, 12534 - 12644
Alignment:
Q  198 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 297  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12534 gtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgt 12633  T
Q  298 ataacccttgt 308  Q
    ||| |||||||    
T  12634 atatcccttgt 12644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 187
Target Start/End: Original strand, 12437 - 12543
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctca-----------agcgaaccctaagcgagcagaacccagaccttctgtaagccggtc 180  Q
    ||||||||||||||||| |||||||||||| |||||||||||||           |||||||| ||||||||| |||||||||||| |||||||||||||    
T  12437 cctgtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacctactgtaagccggtc 12536  T
Q  181 gcttaag 187  Q
    |||||||    
T  12537 gcttaag 12543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 136 - 305
Target Start/End: Complemental strand, 13743121 - 13742955
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 235  Q
    ||||| || ||||||||| |||||||||||| || ||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||   || |    
T  13743121 agcgacccgtaagcgagctgaacccagacctactataagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcc---ttct 13743025  T
Q  236 gaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgtataaccct 305  Q
    ||| ||||| |||||||| ||||||||||||||||||||||| ||| |||| ||||||| ||||||||||    
T  13743024 gaacttttgtttcgtgcatgaggggacttcttgagcattctataatatttcttttaactagtataaccct 13742955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 89 - 306
Target Start/End: Complemental strand, 16676845 - 16676628
Alignment:
Q  89 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 188  Q
    |||||||| ||||||||||| |||||||||||| |  | |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||||     
T  16676845 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccataagcgagcggaacccagacttactgtaagccggtcgcttaagc 16676746  T
Q  189 gaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcc 287  Q
    ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |||||||||  || ||| ||||    
T  16676745 gaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttttgagcattgaaacatggttcc 16676647  T
Q  288 tttaacttgtataaccctt 306  Q
    || ||||||||||||||||    
T  16676646 ttcaacttgtataaccctt 16676628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 89 - 306
Target Start/End: Complemental strand, 17651081 - 17650864
Alignment:
Q  89 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 188  Q
    |||||||| ||||||||||| |||||||||||| |  | |||||||||||||||| ||||||||| |||||||||| | ||||||||||||||||||||     
T  17651081 gaacctgtaagcgaaaaaccattttgattctgtcaagaattcgctcaagcgaaccataagcgagcggaacccagacttactgtaagccggtcgcttaagc 17650982  T
Q  189 gaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcc 287  Q
    ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |||||||||  || ||| ||||    
T  17650981 gaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttttgagcattgaaacatggttcc 17650883  T
Q  288 tttaacttgtataaccctt 306  Q
    || ||||||||||||||||    
T  17650882 ttcaacttgtataaccctt 17650864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 95 - 277
Target Start/End: Original strand, 13123506 - 13123698
Alignment:
Q  95 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 183  Q
    |||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| |||||||  |||||||    
T  13123506 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactgtaagttggtcgct 13123605  T
Q  184 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattcta 277  Q
    |||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| |||||||||||||||||||||||    
T  13123606 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattcta 13123698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 12710496 - 12710627
Alignment:
Q  145 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 244  Q
    ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | ||     
T  12710496 taagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactatta 12710594  T
Q  245 cttcgtgcacgaggggacttcttgagcattcta 277  Q
    ||| ||||| |||||||||||||||||||||||    
T  12710595 cttagtgcatgaggggacttcttgagcattcta 12710627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 92 - 276
Target Start/End: Complemental strand, 13006901 - 13006706
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 179  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  13006901 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 13006802  T
Q  180 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 276  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  13006801 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 13006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 11389910 - 11390020
Alignment:
Q  128 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcag 226  Q
    |||||||||||||||| ||||||||| |||||||||| | |||| || |||||||||||| || ||| | ||||||||||||||| ||| ||||||||||    
T  11389910 ttcgctcaagcgaaccgtaagcgagcggaacccagacttactgtgagtcggtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcag 11390008  T
Q  227 cctctttttgaa 238  Q
    || |||||||||    
T  11390009 ccactttttgaa 11390020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 134 - 212
Target Start/End: Original strand, 20311631 - 20311709
Alignment:
Q  134 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 212  Q
    |||||||||| |||||||||||||||||||| | ||| |||||||||||||||| || ||| | |||||||||||||||    
T  20311631 caagcgaaccgtaagcgagcagaacccagacttactgcaagccggtcgcttaagcgagctagccgtcgcttaagcgaag 20311709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 305
Target Start/End: Complemental strand, 46625403 - 46625265
Alignment:
Q  167 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 265  Q
    ||||||||| ||||||||||| || | | | ||||||||||||||||  | ||||||||||| || |||||| ||||| ||||||||| |||| | | |     
T  46625403 tctgtaagcaggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactctttgaa-ttttgtttcgtgcactagggaatcctt 46625305  T
Q  266 ttgagcattctaaaatgtttcctttaacttgtataaccct 305  Q
    ||||||||| ||||||||||| || ||||||||| |||||    
T  46625304 ttgagcattttaaaatgtttctttcaacttgtatgaccct 46625265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 303
Target Start/End: Complemental strand, 13678906 - 13678770
Alignment:
Q  167 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 264  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  13678906 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 13678809  T
Q  265 cttgagcattctaaaatgtttcctttaacttgtataacc 303  Q
     |||||||||  |||||||||| || || ||||||||||    
T  13678808 tttgagcattaaaaaatgtttctttcaatttgtataacc 13678770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 227
Target Start/End: Original strand, 12591230 - 12591377
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 179  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  12591230 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaaccgtgagcgacccgtaagcgaactgatcccagatcctactgtaagctggt 12591329  T
Q  180 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 227  Q
    |||||||| |||||| | |||||||||||||||||| |||||||||||    
T  12591330 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagc 12591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 261
Target Start/End: Original strand, 11383440 - 11383554
Alignment:
Q  146 aagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttg 244  Q
    |||||||| |||||||||| | |||| |||| |||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||    
T  11383440 aagcgagcggaacccagacttactgtgagcctgtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttg 11383537  T
Q  245 cttcgtgcacgagggga 261  Q
    | |||||||| ||||||    
T  11383538 cctcgtgcactagggga 11383554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 238
Target Start/End: Complemental strand, 16090559 - 16090457
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 235  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  16090559 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 16090460  T
Q  236 gaa 238  Q
    |||    
T  16090459 gaa 16090457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 14320243 - 14320315
Alignment:
Q  166 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 238  Q
    |||||| ||||||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  14320243 ttctgtgagccggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 14320315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 212
Target Start/End: Original strand, 21231554 - 21231643
Alignment:
Q  123 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 212  Q
    ||||||||||||||||||||| | ||||||| ||||||  || |||||| ||| |||||||||||  ||||    |||||||||||||||    
T  21231554 agaagttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtgagctggtcgcttaagcaaactggtcgtcgcttaagcgaag 21231643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 2464838 - 2464758
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 216  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||    
T  2464838 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgag 2464758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 3858007 - 3858087
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 216  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||    
T  3858007 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgag 3858087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 3857953 - 3858003
Alignment:
Q  94 tgtgagcgaaaaaccgtttt-gattctgttagaagttcgctcaagcgaacc 143  Q
    ||||||||||||||| |||| |||||||||  |||||||||||||||||||    
T  3857953 tgtgagcgaaaaaccatttttgattctgttcaaagttcgctcaagcgaacc 3858003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 29181690 - 29181780
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 226  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||| || ||||  ||||||||    
T  29181690 agcgacccataagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcaaactgagtgttagtcag 29181780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 2966431 - 2966383
Alignment:
Q  145 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 193  Q
    ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  2966431 taagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 2966383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 12710435 - 12710483
Alignment:
Q  95 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 143  Q
    |||||| ||||||| ||||||||||||   |||||||||||||||||||    
T  12710435 gtgagccaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 12710483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 20907038 - 20907086
Alignment:
Q  145 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 193  Q
    ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  20907038 taagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 20907086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 127 - 308
Target Start/End: Complemental strand, 30383 - 30202
Alignment:
Q  127 gttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcag 226  Q
    |||| |||||||||||| | |||||||  |||| | || |||||||||||||||||||||| || | | |  ||||||||||||||||||||||||||||    
T  30383 gttcactcaagcgaaccgtgagcgagcgaaacctaaactttctgtaagccggtcgcttaagcgagccaaccttcgcttaagcgaagtgagccttagtcag 30284  T
Q  227 cctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
    || |||| |||| ||||||||||||||| |||||| | | ||||||||||||||||||||| || ||||||||||||||||||    
T  30283 ccactttctgaa-ttttgcttcgtgcactaggggacccttttgagcattctaaaatgtttctttcaacttgtataacccttgt 30202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 136 - 277
Target Start/End: Complemental strand, 592 - 452
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 235  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | ||||||||||||||||||| |||||||||||| ||| |    
T  592 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgagtcttagtcagcct-tttct 494  T
Q  236 gaatttttgcttcgtgcacgaggggacttcttgagcattcta 277  Q
    ||| | || ||| ||||| |||||||||||||||||||||||    
T  493 gaactattacttagtgcatgaggggacttcttgagcattcta 452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 198 - 301
Target Start/End: Complemental strand, 407 - 305
Alignment:
Q  198 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 297  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  407 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 309  T
Q  298 ataa 301  Q
    ||||    
T  308 ataa 305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 198 - 301
Target Start/End: Complemental strand, 7552 - 7450
Alignment:
Q  198 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 297  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  7552 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 7454  T
Q  298 ataa 301  Q
    ||||    
T  7453 ataa 7450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 504 - 409
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgct-----------caagcgaaccctaagcgagcagaacccagaccttctgtaagcc 176  Q
    ||||||||||||||||| |||||||||||| |||||||||||           ||| ||||||||||||||||||||||||||| |||||||||||    
T  504 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagcc 409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 7649 - 7554
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgct-----------caagcgaaccctaagcgagcagaacccagaccttctgtaagcc 176  Q
    ||||||||||||||||| |||||||||||| |||||||||||           ||| ||||||||||||||||||||||||||| |||||||||||    
T  7649 cctgtgagcgaaaaaccattttgattctgtcagaagttcgcttaagcgaaccgcaaacgaaccctaagcgagcagaacccagactttctgtaagcc 7554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 92 - 277
Target Start/End: Original strand, 8046420 - 8046616
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtc 180  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| || ||||  ||||    
T  8046420 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagacctactataagttggtc 8046519  T
Q  181 gcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattcta 277  Q
    ||||||| || |||   |||||||||||||||||||||||||||||||| ||| |||| | || ||| ||||| |||||||||||||||||||||||    
T  8046520 gcttaagcgagctagacgtcgcttaagcgaagtgagccttagtcagcctttttctgaactgttacttagtgcatgaggggacttcttgagcattcta 8046616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 15407608 - 15407485
Alignment:
Q  89 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 188  Q
    ||||| || ||||||||||| |||||||||||  ||||||||||||||||||||| | ||||||| ||||| |||| |||||| |||||||||||||||     
T  15407608 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagcgagcggaacctagactttctgtgagccggtcgcttaagc 15407509  T
Q  189 gaactatctgtcgcttaagcgaag 212  Q
    |||||  | |||||||||||||||    
T  15407508 gaactggccgtcgcttaagcgaag 15407485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 228
Target Start/End: Complemental strand, 14486154 - 14486052
Alignment:
Q  126 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 225  Q
    |||||||||||||||||| | ||||||| ||||||| ||  ||||||||||||||||||||| || | | |  |||||||||||||||||||||||||||    
T  14486154 agttcgctcaagcgaaccgtgagcgagcggaacccaaactctctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttagtca 14486055  T
Q  226 gcc 228  Q
    |||    
T  14486054 gcc 14486052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 53483171 - 53483022
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 179  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | || |||||| ||| |||||||| |||    
T  53483171 cctgtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgagcccagagcctactgtaagctggt 53483072  T
Q  180 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 229  Q
    |||||||| |||||  | |||||||||||||||||| |||||||||||||    
T  53483071 cgcttaagcgaacttgccgtcgcttaagcgaagtgaaccttagtcagcct 53483022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 262
Target Start/End: Complemental strand, 11847537 - 11847453
Alignment:
Q  177 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 262  Q
    ||||||||||| |||||| | |||||||||||||  ||||||||||||||||||||| ||||  ||||||| |||||| |||||||    
T  11847537 ggtcgcttaagcgaactacccgtcgcttaagcgagctgagccttagtcagcctctttctgaa-ctttgctttgtgcactaggggac 11847453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 16147412 - 16147514
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 235  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  16147412 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 16147511  T
Q  236 gaa 238  Q
    |||    
T  16147512 gaa 16147514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 27905729 - 27905613
Alignment:
Q  145 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 244  Q
    |||||||||| |||||  ||||| ||| ||| | ||||||||| || ||| |  ||||||||||||  ||||||| |||||||| |||| ||||||||||    
T  27905729 taagcgagcaaaaccccaaccttttgtgagctgatcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttg 27905631  T
Q  245 cttcgtgcacgaggggac 262  Q
    |||||||||  |||||||    
T  27905630 cttcgtgcattaggggac 27905613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 15244658 - 15244566
Alignment:
Q  167 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 259  Q
    ||||||||||||||||||||| ||   | | ||||||||| |||||   | ||||||||||| ||||||||| ||||||||||||||| ||||    
T  15244658 tctgtaagccggtcgcttaagcgagtcaaccgtcgcttaatcgaagaaggtcttagtcagccactttttgaaattttgcttcgtgcactaggg 15244566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 14486037 - 14485995
Alignment:
Q  266 ttgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
    ||||||||||||||||||||| || | ||||||||||||||||    
T  14486037 ttgagcattctaaaatgtttctttcagcttgtataacccttgt 14485995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 308
Target Start/End: Complemental strand, 13887258 - 13887087
Alignment:
Q  137 gcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttg 236  Q
    ||||||| | |||||||||||| |  ||  ||||||||||||||| ||||| || | | | |||||||||||||||   | |||||| |||| | |||||    
T  13887258 gcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgcttaagcgaagaaggtcttagttagccac-ttttg 13887160  T
Q  237 aatttttgcttcgtgcacgagggga-cttcttgagcattct-aaaatgtttcctttaacttgtataacccttgt 308  Q
    || ||||||||||||||| |||| | | | |||| |||| | |||||||||| || ||||||||||||| ||||    
T  13887159 aa-ttttgcttcgtgcactagggaatccttttgaacattttaaaaatgtttctttcaacttgtataacctttgt 13887087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 308
Target Start/End: Complemental strand, 13888115 - 13887944
Alignment:
Q  137 gcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttg 236  Q
    ||||||| | |||||||||||| |  ||  ||||||||||||||| ||||| || | | | |||||||||||||||   | |||||| |||| | |||||    
T  13888115 gcgaaccattagcgagcagaacgccaactctctgtaagccggtcgtttaagcgagccagccgtcgcttaagcgaagaaggtcttagttagccac-ttttg 13888017  T
Q  237 aatttttgcttcgtgcacgagggga-cttcttgagcattct-aaaatgtttcctttaacttgtataacccttgt 308  Q
    || ||||||||||||||| |||| | | | |||| |||| | |||||||||| || ||||||||||||| ||||    
T  13888016 aa-ttttgcttcgtgcactagggaatccttttgaacattttaaaaatgtttctttcaacttgtataacctttgt 13887944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 259
Target Start/End: Complemental strand, 15307563 - 15307471
Alignment:
Q  167 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 259  Q
    |||||||| |||||||||||| || | | |  ||||||||||||||   | ||||||||||| ||||| |||  |||||||||||||| ||||    
T  15307563 tctgtaagtcggtcgcttaagcgagccagccatcgcttaagcgaagaaggtcttagtcagccacttttcgaaactttgcttcgtgcactaggg 15307471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 261
Target Start/End: Original strand, 581 - 752
Alignment:
Q  89 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 188  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||||||||||||| | |||||||  |||||  || ||||||||||||||||||||||     
T  581 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagcgagcgaaaccccaactttctgtaagccggtcgcttaagc 680  T
Q  189 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 261  Q
    |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  681 gaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 261
Target Start/End: Original strand, 7605 - 7688
Alignment:
Q  177 ggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 261  Q
    ||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  7605 ggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 7688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 136 - 277
Target Start/End: Complemental strand, 23866026 - 23865885
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 235  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |    
T  23866026 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcctttttct 23865927  T
Q  236 gaatttttgcttcgtgcacgaggggacttcttgagcattcta 277  Q
    ||| | || ||| ||||| |||||||||||||||||||||||    
T  23865926 gaactattacttagtgcatgaggggacttcttgagcattcta 23865885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 14057148 - 14057271
Alignment:
Q  89 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 188  Q
    ||||| ||||| |||||||| |||||||||||  | ||||||||||||||||||| | ||||||| |||||||||| |||||| |||||||||||||||     
T  14057148 gaacccgtgagtgaaaaaccattttgattctgccataagttcgctcaagcgaaccgtcagcgagcggaacccagactttctgtgagccggtcgcttaagc 14057247  T
Q  189 gaactatctgtcgcttaagcgaag 212  Q
    || ||| | |||||||||||||||    
T  14057248 gagctagccgtcgcttaagcgaag 14057271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 89 - 212
Target Start/End: Complemental strand, 25111508 - 25111385
Alignment:
Q  89 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 188  Q
    ||||| || ||||||||||| |||||||||||  ||||||||||||||||||||| | ||||||| |||||||||| |||||| || ||||||||||||     
T  25111508 gaacccgtaagcgaaaaaccattttgattctgccagaagttcgctcaagcgaaccgtcagcgagcggaacccagactttctgtgagtcggtcgcttaagc 25111409  T
Q  189 gaactatctgtcgcttaagcgaag 212  Q
    |||||  | |||||||||||||||    
T  25111408 gaactggccgtcgcttaagcgaag 25111385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 24321252 - 24321376
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 235  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  24321252 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 24321350  T
Q  236 gaatttttgcttcgtgcacgaggggac 262  Q
    ||| | ||||||||| ||| |||||||    
T  24321351 gaa-tcttgcttcgtacactaggggac 24321376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 303
Target Start/End: Complemental strand, 18613697 - 18613529
Alignment:
Q  134 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 232  Q
    |||||||||| | ||||||| ||||||  ||  ||||||||| ||||||||||| |||| | | ||||||||||||||| ||| |||||||| ||| | |    
T  18613697 caagcgaaccgttagcgagcggaaccccaactctctgtaagcaggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcggccac-t 18613600  T
Q  233 tttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 303  Q
    ||||||  ||||| |||||||| |||||| | |||||||||||  |||||||| | || |||||||||||||    
T  18613599 tttgaa-ctttgcctcgtgcactaggggatcctcttgagcatttaaaaatgttcctttcaacttgtataacc 18613529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 308
Target Start/End: Complemental strand, 21931187 - 21931021
Alignment:
Q  142 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag-tcagcctctttttgaatt 240  Q
    |||| |||||||||||| |  ||  |||||||| ||||||||||||||||| | |  ||||||||||||||   ||||| | |||||| ||||||||  |    
T  21931187 cccttagcgagcagaacaccaactctctgtaagtcggtcgcttaagtgaaccagccttcgcttaagcgaagaaggcctttggtcagccactttttga--t 21931090  T
Q  241 tttgcttcgtgcacgagggga--cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
    |||||||| | ||| |||| |  | ||| ||||||||||||||||||| || ||||||||||||| ||||    
T  21931089 tttgcttcctccactagggaatccatct-gagcattctaaaatgtttctttcaacttgtataacctttgt 21931021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 143
Target Start/End: Complemental strand, 17054060 - 17054009
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 143  Q
    ||||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  17054060 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 17054009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 23866078 - 23866030
Alignment:
Q  95 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 143  Q
    |||| ||||||||| ||||||||||||   |||||||||||||||||||    
T  23866078 gtgatcgaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 23866030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 123 - 308
Target Start/End: Original strand, 129204 - 129390
Alignment:
Q  123 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 222  Q
    ||||||||||| ||||||||| | ||||||| ||||||  || |||||| ||||||||||||||| || | | | |||||||||||||||   | |||||    
T  129204 agaagttcgcttaagcgaaccgttagcgagcggaaccccaactttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagaaggtcttag 129303  T
Q  223 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagca-ttctaaaatgtttcctttaacttgtataacccttgt 308  Q
    |||||| ||||||||| ||||||||||||||| |||||| | | ||||||| || | |||||||||||| ||||||||||||| ||||    
T  129304 tcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcatttttgaaatgtttccttcaacttgtataacctttgt 129390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 303
Target Start/End: Complemental strand, 116366 - 116173
Alignment:
Q  110 ttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcg 209  Q
    |||| ||||||| ||||||||||||||||||||| | |||||||  || ||  ||  ||||||||||||||||||||| |||| | | ||||||||||||    
T  116366 ttttcattctgtcagaagttcgctcaagcgaaccgttagcgagcgaaatcccaactctctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcg 116267  T
Q  210 aag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 303  Q
    ||| ||| ||||||||||||  ||||||||  ||||| |||||||| |||||| | | ||||| ||| ||||||||||| || ||| |||||||||    
T  116266 aagatga-ccttagtcagccattttttgaa-ctttgcctcgtgcactaggggatccttttgagtattttaaaatgtttctttcaacctgtataacc 116173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 276
Target Start/End: Original strand, 9167 - 9358
Alignment:
Q  95 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 183  Q
    |||||||||||||| ||||||||||||   ||||||||||||||||||| |           |||||| | |||||||||||| |||||||  |||||||    
T  9167 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaaccgtgagcgacccataagcgaactgaacccagacctactgtaagttggtcgct 9266  T
Q  184 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 276  Q
    |||| || ||| | ||||||||||||||||||| |||||||||||| ||| | || |||| ||| ||||| ||||||||||||||||||||||    
T  9267 taagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctaaacttttacttagtgcatgaggggacttcttgagcattct 9358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 95 - 228
Target Start/End: Original strand, 14977 - 15121
Alignment:
Q  95 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccagaccttctgtaagccggtcgct 183  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| |           |||||||| |||||||||| | ||||||||||||||||    
T  14977 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagcgagctgaacccagacttactgtaagccggtcgct 15076  T
Q  184 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 228  Q
    |||| |||||| | |||||||||||||||||  ||||||||||||    
T  15077 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 15121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 8e-27; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 136 - 276
Target Start/End: Original strand, 41455741 - 41455882
Alignment:
Q  136 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 234  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||||||||||| |||     
T  41455741 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcctttttc 41455840  T
Q  235 tgaatttttgcttcgtgcacgaggggacttcttgagcattct 276  Q
    |||| | |||||| ||||| ||||||||||| ||||| ||||    
T  41455841 tgaactgttgcttagtgcatgaggggacttcctgagcgttct 41455882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 55499658 - 55499798
Alignment:
Q  98 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 197  Q
    |||||||||||  ||||||||||  |  ||||||||||| |||||| ||||||||||||||| |||| | |||||||||||||||||||| ||||||       
T  55499658 agcgaaaaaccaatttgattctgccaagagttcgctcaaacgaaccgtaagcgagcagaacctagacttactgtaagccggtcgcttaagcgaactagac 55499757  T
Q  198 gtcgcttaagcgaagtgagccttagtcagcctctttttgaa 238  Q
    ||||||||||||||||    ||||||||||| |||||||||    
T  55499758 gtcgcttaagcgaagttgatcttagtcagccactttttgaa 55499798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 128 - 238
Target Start/End: Original strand, 16802029 - 16802139
Alignment:
Q  128 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 227  Q
    |||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| || ||| | |||| |||||||||||   ||||||| |||    
T  16802029 ttcgctcaagcgaaccgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagctagccgtcgtttaagcgaagttgaccttagttagc 16802128  T
Q  228 ctctttttgaa 238  Q
    | |||||||||    
T  16802129 cactttttgaa 16802139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 228
Target Start/End: Complemental strand, 24192418 - 24192274
Alignment:
Q  95 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcag-----------aacccagaccttctgtaagccggtcgct 183  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||| | ||||| | |           ||||||||| | ||||||||||||||||    
T  24192418 gtgagcgaaaaaccattttgattctgtcagaagttcgctcaagcgaaccgtgagcgaaccgtaagtgagttgaacccagacttactgtaagccggtcgct 24192319  T
Q  184 taagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 228  Q
    |||| |||||| | |||||||||||||||||  ||||||||||||    
T  24192318 taagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 24192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 147 - 308
Target Start/End: Original strand, 13324381 - 13324542
Alignment:
Q  147 agcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgct 246  Q
    |||||||| |||||| || ||||| ||||| |||||||||| || | | |  ||||||||||||  |||||||||||||||| |||| |||| |||||||    
T  13324381 agcgagcaaaacccaaactttctgcaagccagtcgcttaagcgagccagccttcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgct 13324479  T
Q  247 tcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
    |||||||  |||||| | | |||||||||| || ||||||| || | ||| ||||||||||||    
T  13324480 tcgtgcattaggggacccttttgagcattcaaagatgtttctttcagcttatataacccttgt 13324542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 308
Target Start/End: Original strand, 13302844 - 13302954
Alignment:
Q  198 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 296  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||| || ||||||| || | |||     
T  13302844 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcattcaaagatgtttctttcagctta 13302942  T
Q  297 tataacccttgt 308  Q
    ||||||||||||    
T  13302943 tataacccttgt 13302954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 308
Target Start/End: Original strand, 13313520 - 13313630
Alignment:
Q  198 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 296  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||  || ||||||| || | |||     
T  13313520 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcatttaaagatgtttctttcagctta 13313618  T
Q  297 tataacccttgt 308  Q
    ||||||||||||    
T  13313619 tataacccttgt 13313630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 238
Target Start/End: Complemental strand, 14865319 - 14865216
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctg-tcgcttaagcgaagtgagccttagtcagcctctttt 234  Q
    ||||| || ||||||| | |||||||||||| || ||||| ||||||||||| |||||| | | ||||||||||||| ||||  ||||||||||| |||     
T  14865319 agcgacccgtaagcgaactgaacccagacctactctaagctggtcgcttaagcgaactagccgttcgcttaagcgaactgagtgttagtcagcctttttc 14865220  T
Q  235 tgaa 238  Q
    ||||    
T  14865219 tgaa 14865216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 253
Target Start/End: Complemental strand, 18914590 - 18914472
Alignment:
Q  134 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 232  Q
    |||||||||| | ||||||| ||||||  ||  ||| ||||||||||||||||| ||||   |  |||||||||||||| ||| |||||||||||| | |    
T  18914590 caagcgaacctttagcgagcggaaccccaactctctataagccggtcgcttaagcgaacctgccatcgcttaagcgaagatga-ccttagtcagccac-t 18914493  T
Q  233 tttgaatttttgcttcgtgca 253  Q
    ||||||||||||| |||||||    
T  18914492 tttgaatttttgcctcgtgca 18914472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 10390034 - 10390083
Alignment:
Q  93 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 142  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10390034 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10390083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 10415123 - 10415172
Alignment:
Q  93 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 142  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10415123 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10415172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 10421793 - 10421842
Alignment:
Q  93 ctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 142  Q
    |||||||||||||||| ||||||||||||   || |||||||||||||||    
T  10421793 ctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 10421842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 12034007 - 12034072
Alignment:
Q  128 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 193  Q
    |||||| |||||| || ||||||| |  ||||||||||| |||||||| ||||||||||| |||||    
T  12034007 ttcgcttaagcgacccgtaagcgaactaaacccagacctactgtaagctggtcgcttaagcgaact 12034072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 8e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 89 - 261
Target Start/End: Complemental strand, 18712270 - 18712098
Alignment:
Q  89 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 188  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||| ||||| ||| | ||||||| ||||||  || |||||||||| |||||||||||     
T  18712270 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgcttaagcgtaccgttagcgagcggaaccccaactttctgtaagctggtcgcttaagc 18712171  T
Q  189 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 261  Q
    |||||| | ||||||||||||||| ||| |||||||||||| | ||||||| |||||| |||||||| ||||||    
T  18712170 gaactagccgtcgcttaagcgaagatga-ccttagtcagccaccttttgaacttttgcctcgtgcactagggga 18712098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 276
Target Start/End: Complemental strand, 41111354 - 41111214
Alignment:
Q  136 agcgaaccctaagcgagcagaacccaga-ccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 234  Q
    ||||| || ||||||| | ||||||||| ||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| |||     
T  41111354 agcgacccgtaagcgaactgaacccagaacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttc 41111256  T
Q  235 tgaatttttgcttcgtgcacgaggggacttcttgagcattct 276  Q
    |||| | |||||| ||||| ||||||||||||||||| ||||    
T  41111255 tgaactgttgcttagtgcatgaggggacttcttgagcgttct 41111214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 21710292 - 21710167
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 235  Q
    |||||||| ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| |||      
T  21710292 agcgaaccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcctttttcc 21710193  T
Q  236 gaatttttgcttcgtgcacgaggggac 262  Q
    ||| | ||||||||| ||| |||||||    
T  21710192 gaa-tcttgcttcgtacactaggggac 21710167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 20851714 - 20851838
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 235  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  20851714 agcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 20851812  T
Q  236 gaatttttgcttcgtgcacgaggggac 262  Q
    ||| | ||||||||| ||| |||||||    
T  20851813 gaa-tcttgcttcgtacactaggggac 20851838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 21705749 - 21705625
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 235  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |    
T  21705749 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttct 21705651  T
Q  236 gaatttttgcttcgtgcacgaggggac 262  Q
    ||| | ||||||||| ||| |||||||    
T  21705650 gaa-tcttgcttcgtacactaggggac 21705625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 20858341 - 20858434
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 229  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| ||||||    
T  20858341 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct 20858434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 140 - 308
Target Start/End: Original strand, 22030333 - 22030501
Alignment:
Q  140 aaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaat 239  Q
    |||||| |||||||||||| |  ||  |||||||||| |||||||||| || | | |  ||||||||||||||   | ||||||||||| |||||| |||    
T  22030333 aacccttagcgagcagaacaccaactctctgtaagccagtcgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccacttttt-aat 22030431  T
Q  240 ttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
    ||||||||| ||||| |||  | | | |||||||||||| |||||||| || ||||||||||||| ||||    
T  22030432 ttttgcttcttgcactaggaaatccttttgagcattctataatgtttctttcaacttgtataacctttgt 22030501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 19961622 - 19961491
Alignment:
Q  177 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 275  Q
    ||||||||||| || ||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||||||||| |||||| | | ||||| |||     
T  19961622 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtattt 19961524  T
Q  276 taaaatgtttcctttaacttgtataacccttgt 308  Q
    | |  |||||| |||| ||||||||||||||||    
T  19961523 ttacgtgtttcttttagcttgtataacccttgt 19961491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 306
Target Start/End: Complemental strand, 11157554 - 11157446
Alignment:
Q  198 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 295  Q
    ||||||||||||||| ||| ||||||||| || ||||||||| ||| || |||||||  |||||| | | |||||||||  |||||||||| || |||||    
T  11157554 gtcgcttaagcgaagatga-ccttagtcaaccactttttgaacttt-gcctcgtgcattaggggatccttttgagcatttaaaaatgtttctttcaactt 11157457  T
Q  296 gtataaccctt 306  Q
    |||||||||||    
T  11157456 gtataaccctt 11157446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 41111407 - 41111358
Alignment:
Q  94 tgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 143  Q
    ||||||||||||||| |||| |||||||   |||||||||||||||||||    
T  41111407 tgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaacc 41111358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 167 - 308
Target Start/End: Complemental strand, 1261 - 1120
Alignment:
Q  167 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 265  Q
    ||||| ||||||||||||||| || | | | ||||||||||||||| | | ||||||||||| ||||||||| ||||||||||||||| |||||| | |     
T  1261 tctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatcctt 1163  T
Q  266 ttgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
    ||||||||| ||||||||||| || ||||||||||||| ||||    
T  1162 ttgagcattttaaaatgtttctttcaacttgtataacctttgt 1120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 89 - 238
Target Start/End: Original strand, 34861 - 35010
Alignment:
Q  89 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 188  Q
    ||||| || ||||||||| |  ||| ||||||| ||||||||||||||||||||| | ||||||| |||||   || ||||||||||||||||||||||     
T  34861 gaacccgtaagcgaaaaatcaatttcattctgtcagaagttcgctcaagcgaaccgtcagcgagcggaacctcaactttctgtaagccggtcgcttaagc 34960  T
Q  189 gaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaa 238  Q
    |||||| |  |||||||||||||| ||| |||||||||||| |||||||||    
T  34961 gaactagccatcgcttaagcgaagatga-ccttagtcagccactttttgaa 35010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 92 - 276
Target Start/End: Complemental strand, 23528099 - 23527904
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccct-----------aagcgagcagaacccaga-ccttctgtaagccggt 179  Q
    ||||||||||||||||| |||| |||||||   ||||||||||||||||||| |           |||||| | ||||||||| ||| |||||||| |||    
T  23528099 cctgtgagcgaaaaaccattttcattctgtccaaagttcgctcaagcgaaccgtgagcgacccgtaagcgaactgaacccagaacctactgtaagctggt 23528000  T
Q  180 cgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattct 276  Q
    |||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||||||||||| ||||    
T  23527999 cgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggacttcttgagcgttct 23527904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 134 - 298
Target Start/End: Original strand, 18408521 - 18408685
Alignment:
Q  134 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcg-aagtgagccttagtcagcctctt 232  Q
    |||||||||| | ||||||| ||||||  || ||||||||||||||||||||||  ||||| | |||||||||||| || ||| |||||||||||| |||    
T  18408521 caagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcaaactagccgtcgcttaagcgaaaatga-ccttagtcagccactt 18408619  T
Q  233 tttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgta 298  Q
    ||||||  ||||| |||||||| |||||| | | ||||||||| | ||||||| | || ||||||||    
T  18408620 tttgaa-ctttgcctcgtgcactaggggattcttttgagcatttttaaatgttcctttcaacttgta 18408685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 216
Target Start/End: Complemental strand, 19236374 - 19236294
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 216  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||    
T  19236374 agcgacccataagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgag 19236294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 22439310 - 22439369
Alignment:
Q  128 ttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 187  Q
    |||||| ||| ||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  22439310 ttcgcttaagtgaaccttaagcgagcagaacccagacttactgtaagccggtcgcttaag 22439369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 22460611 - 22460506
Alignment:
Q  155 gaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 254  Q
    |||||||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| |||    
T  22460611 gaacccagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacac 22460514  T
Q  255 gaggggac 262  Q
     |||||||    
T  22460513 taggggac 22460506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 262
Target Start/End: Complemental strand, 34829539 - 34829432
Alignment:
Q  154 agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgca 253  Q
    |||||||  ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||| ||| ||| ||||  |||||||||||||    
T  34829539 agaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcaacctttttctgaa-ctttgcttcgtgca 34829441  T
Q  254 cgaggggac 262  Q
    | |||||||    
T  34829440 ctaggggac 34829432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 262
Target Start/End: Complemental strand, 22467254 - 22467130
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 235  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||| ||||| |||||| | |||||||||||| | ||||  |||| |||||| ||| |    
T  22467254 agcgacccataagcgaactgaacccagacctactgtaagctggtcggttaagcgaactagccgtcgcttaagcgtactgagtgttagacagcct-tttct 22467156  T
Q  236 gaatttttgcttcgtgcacgaggggac 262  Q
    ||| | ||||||||| ||| |||||||    
T  22467155 gaa-tcttgcttcgtacactaggggac 22467130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 254
Target Start/End: Complemental strand, 20781192 - 20781102
Alignment:
Q  163 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 254  Q
    ||||| ||| ||| ||||||||||| || ||| | |||||||||||||| | ||  ||||||||||| ||| |||| |||||||||||||||    
T  20781192 accttgtgtgagctggtcgcttaagcgagctacccgtcgcttaagcgaactaagtgttagtcagcctttttctgaa-ttttgcttcgtgcac 20781102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 20819689 - 20819639
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 142  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  20819689 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 20819639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 20826789 - 20826739
Alignment:
Q  92 cctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaac 142  Q
    ||||||||||||||||| ||||||||||||   || |||||||||||||||    
T  20826789 cctgtgagcgaaaaaccattttgattctgtccaaatttcgctcaagcgaac 20826739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 28889978 - 28890058
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 216  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28889978 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28890058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 28896682 - 28896762
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 216  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28896682 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28896762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 28909930 - 28910010
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 216  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28909930 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28910010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 28931622 - 28931702
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 216  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28931622 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28931702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 216
Target Start/End: Original strand, 28946325 - 28946405
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 216  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| ||  || | |||||||||||||| ||||    
T  28946325 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagatagccgtcgcttaagcgaactgag 28946405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 102 - 261
Target Start/End: Original strand, 15475 - 15633
Alignment:
Q  102 aaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcg 201  Q
    ||||||| |||| ||||||  ||||||||||||||||||||| | ||||||| ||||||  || |||||| |||| ||||||||||||| ||| |  |||    
T  15475 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtgagccagtcgcttaagtgagctagccatcg 15574  T
Q  202 cttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 261  Q
    ||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  15575 cttaagcgaagatga-ccttagtcagccactttttgaa-atttgcctcgtgcactagggga 15633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 102 - 238
Target Start/End: Original strand, 23192 - 23328
Alignment:
Q  102 aaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcg 201  Q
    ||||||| |||| ||||||  ||||||||||||||||||||| | ||||||  ||||||  || |||||| ||||||| || |||| || ||| | ||||    
T  23192 aaaaaccattttcattctgccagaagttcgctcaagcgaaccgtcagcgagttgaaccccaactttctgtgagccggttgcctaagcgagctagccgtcg 23291  T
Q  202 cttaagcgaag-tgagccttagtcagcctctttttgaa 238  Q
    ||||||||||| ||| |||||||||||| |||||||||    
T  23292 cttaagcgaagatga-ccttagtcagccactttttgaa 23328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 198 - 305
Target Start/End: Complemental strand, 111284 - 111178
Alignment:
Q  198 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 297  Q
    ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||| | |||||||||| ||    
T  111284 gtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataatttctcctttaactagt 111186  T
Q  298 ataaccct 305  Q
    ||||||||    
T  111185 ataaccct 111178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 91783 - 91881
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 234  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||| ||||| ||||    
T  91783 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagcctttttt 91881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 234
Target Start/End: Original strand, 97509 - 97607
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttt 234  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||| ||||| ||||    
T  97509 agcgacccgtaagcgaactgaacccagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagttagcctttttt 97607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 111378 - 111330
Alignment:
Q  95 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 143  Q
    |||||||||||||| ||||||||||||   |||||||||||||||||||    
T  111378 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaagcgaacc 111330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 167 - 308
Target Start/End: Original strand, 81826 - 81967
Alignment:
Q  167 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 265  Q
    |||||||| |||||||||||| || | | | ||||||||||||||||  | ||||||||||| ||||||||| ||||||||||| ||| |||| | | |     
T  81826 tctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactttttgaa-ttttgcttcgtacaccagggaatcctt 81924  T
Q  266 ttgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
    ||||||||| ||||||||||| || ||||||||||||||||||    
T  81925 ttgagcattttaaaatgtttctttcaacttgtataacccttgt 81967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 80072 - 80174
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 235  Q
    ||||| || ||||||| | |||||||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| |    
T  80072 agcgacccgtaagcgaactgaacccagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttct 80171  T
Q  236 gaa 238  Q
    |||    
T  80172 gaa 80174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 95 - 212
Target Start/End: Complemental strand, 7024 - 6907
Alignment:
Q  95 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaacta 194  Q
    ||||||||  |||| |||||||||||  || | || ||||||||||| | |||||||||||||||||||| | |||||||||||||||||||| || |||    
T  7024 gtgagcgaggaacctttttgattctgccaggaatttgctcaagcgaatcgtaagcgagcagaacccagacttactgtaagccggtcgcttaagcgagcta 6925  T
Q  195 tctgtcgcttaagcgaag 212  Q
     | |||||||||||||||    
T  6924 gccgtcgcttaagcgaag 6907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 226
Target Start/End: Original strand, 4153 - 4281
Alignment:
Q  98 agcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatct 197  Q
    |||||||||||  ||||||||||  |  |||||||||||||||||| ||| |||||||||||||||| | |||||||| | ||||||||| ||||||       
T  4153 agcgaaaaaccaatttgattctgccaagagttcgctcaagcgaaccgtaatcgagcagaacccagacttactgtaagctgatcgcttaagcgaactagac 4252  T
Q  198 gtcgcttaagcgaagtgagccttagtcag 226  Q
    ||||||||||||||||   ||||||||||    
T  4253 gtcgcttaagcgaagttgaccttagtcag 4281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 302
Target Start/End: Complemental strand, 65592 - 65413
Alignment:
Q  123 agaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag 222  Q
    ||||||||||| || |||||| | ||||||| ||||||  ||  ||||||||||||||||||||| |||| | | ||| |||||||| ||    ||||||    
T  65592 agaagttcgcttaaccgaaccgttagcgagcggaaccccaactctctgtaagccggtcgcttaagcgaaccagccgtcacttaagcggagaagaccttag 65493  T
Q  223 tcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataac 302  Q
    |||||| ||||||||| |||||| |||||||| |||||| | | |||| |||| ||||||||||| || ||||||||||||    
T  65492 tcagccactttttgaa-ttttgcctcgtgcactaggggatccttttgaacattttaaaatgtttctttcaacttgtataac 65413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 134 - 298
Target Start/End: Complemental strand, 16247 - 16083
Alignment:
Q  134 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctt 232  Q
    |||||||||| | ||||||| ||||||  || |||||||||||||||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||    
T  16247 caagcgaaccgttagcgagcggaaccccaactttctgtaagccggtcgcttaagcgagctaaccgtcgcttaagcgaagatga-ccttagtcagccactt 16149  T
Q  233 tttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgta 298  Q
    ||||||  ||||| |||||||| |||||| | | ||||||||| | ||||||| | || ||||||||    
T  16148 tttgaa-ctttgcctcgtgcactaggggatccttttgagcatttttaaatgttcctttcaacttgta 16083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 136 - 262
Target Start/End: Original strand, 4253 - 4377
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttttt 235  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||| |  ||||||||||||| ||||| ||||||||||| ||| |    
T  4253 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaactagccatcgcttaagcgaactgagcgttagtcagcct-tttct 4351  T
Q  236 gaatttttgcttcgtgcacgaggggac 262  Q
    ||| | ||||||||||||| |||||||    
T  4352 gaa-tcttgcttcgtgcactaggggac 4377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 3871 - 3975
Alignment:
Q  134 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 233  Q
    |||||||||| |||  |||||||||||||||   |||||||||||||||||||| ||||||   ||||||||||||||||   |||||||||||| ||||    
T  3871 caagcgaaccgtaattgagcagaacccagactcactgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttgaccttagtcagccacttt 3970  T
Q  234 ttgaa 238  Q
    |||||    
T  3971 ttgaa 3975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 134 - 285
Target Start/End: Complemental strand, 17643 - 17492
Alignment:
Q  134 caagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctcttt 233  Q
    |||||||||  | |||||||  |||||| || |||||||||||||||||||||| || | | |  |||||||||||||||||||||| ||||||| ||||    
T  17643 caagcgaactgtgagcgagcgaaacccaaactttctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttggtcagccacttt 17544  T
Q  234 ttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgttt 285  Q
     |||| ||||| ||||||||| ||| || | | ||||||||||||||| ||||    
T  17543 ctgaa-ttttgtttcgtgcactaggcgagccttttgagcattctaaaaggttt 17492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 303
Target Start/End: Original strand, 15521 - 15735
Alignment:
Q  88 agaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaag 187  Q
    |||||| || ||||||||| | |||  ||| ||| ||||||||||||||||||||| | ||||| |  |||||| ||  ||| |||| ||||||||||||    
T  15521 agaacccgtaagcgaaaaatcatttccattatgtcagaagttcgctcaagcgaaccgttagcgaacgaaacccaaactctctataagacggtcgcttaag 15620  T
Q  188 tgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgttt 285  Q
     |||| | | ||||||||||||||| ||| |||||||||||| ||||| ||| ||| || |||||||| ||| || | | |||||||||  |||||||||    
T  15621 cgaaccaaccgtcgcttaagcgaagatga-ccttagtcagccactttt-gaacttt-gcctcgtgcactaggagatccttttgagcatttaaaaatgttt 15717  T
Q  286 cctttaacttgtataacc 303  Q
    | || |||||||||||||    
T  15718 ctttcaacttgtataacc 15735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 212
Target Start/End: Original strand, 41113 - 41236
Alignment:
Q  89 gaacctgtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagt 188  Q
    ||||| || ||| ||||||| |||  |||||| | |||||||||||||||||||  | ||||||| ||||||  ||||||||| ||||| |||||||||     
T  41113 gaacccgtaagcaaaaaaccatttacattctgcttgaagttcgctcaagcgaactgtcagcgagcggaaccccaaccttctgtgagccgatcgcttaagc 41212  T
Q  189 gaactatctgtcgcttaagcgaag 212  Q
    ||||||   |||||||||||||||    
T  41213 gaactagacgtcgcttaagcgaag 41236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 308
Target Start/End: Complemental strand, 121369 - 121203
Alignment:
Q  142 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaattt 241  Q
    |||| |||||||||||| |  ||  ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||    
T  121369 cccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgacttt 121270  T
Q  242 ttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
    | ||||||||||| |||| | | | ||||||||| ||||||||||| || ||||||||||||| ||||    
T  121269 t-gcttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacctttgt 121203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 142 - 308
Target Start/End: Complemental strand, 132246 - 132080
Alignment:
Q  142 ccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaattt 241  Q
    |||| |||||||||||| |  ||  ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||    
T  132246 cccttagcgagcagaacaccaactctctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgacttt 132147  T
Q  242 ttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
    | ||||||||||| |||| | | | ||||||||| ||||||||||| || ||||||||||||| ||||    
T  132146 t-gcttcgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttgtataacctttgt 132080  T

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Target: scaffold0020 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 126 - 303
Target Start/End: Original strand, 102489 - 102666
Alignment:
Q  126 agttcgctcaagcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtc 224  Q
    |||||||||||||||||| | ||||||| ||||||  || ||||||||| |||||||||||| |||| | |  |||||||||||||| ||| ||||||||    
T  102489 agttcgctcaagcgaaccgtcagcgagcggaaccccaactttctgtaagtcggtcgcttaagcgaaccagccatcgcttaagcgaagatga-ccttagtc 102587  T
Q  225 agcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataacc 303  Q
     ||| |||||||||   |||| |||||||| |||||| | | ||||| ||| ||||| ||||| || ||| |||||||||    
T  102588 ggccactttttgaa-ccttgcctcgtgcactaggggatccttttgagtattttaaaaggtttctttcaacctgtataacc 102666  T

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Target: scaffold0317 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 303
Target Start/End: Complemental strand, 799 - 663
Alignment:
Q  167 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 264  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  799 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 702  T
Q  265 cttgagcattctaaaatgtttcctttaacttgtataacc 303  Q
     |||||||||  |||||||||| || || ||||||||||    
T  701 tttgagcattaaaaaatgtttctttcaatttgtataacc 663  T

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Target: scaffold0261 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 308
Target Start/End: Original strand, 24178 - 24323
Alignment:
Q  163 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga- 261  Q
    ||||| ||| ||| ||||||||||| || |||||  ||||||||||||  |||||||||||||| |||||| ||||  |||||||||||||| ||||||     
T  24178 accttttgtgagctggtcgcttaagcgagctatccttcgcttaagcgagatgagccttagtcagtctctttctgaa-ctttgcttcgtgcactaggggac 24276  T
Q  262 cttcttgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
    | | |||||  || | || |||||| |||| ||||||||||||||||    
T  24277 ccttttgagtgtttttaagtgtttcttttagcttgtataacccttgt 24323  T

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Target: scaffold0232 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 204 - 308
Target Start/End: Original strand, 19059 - 19163
Alignment:
Q  204 taagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataac 302  Q
    ||||||||| | | ||||||||||| ||||||||| ||||||||||||||| |||||| | | ||||||||| ||||||||||| || ||||| ||||||    
T  19059 taagcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatccttttgagcattttaaaatgtttctttcaacttatataac 19157  T
Q  303 ccttgt 308  Q
    | ||||    
T  19158 ctttgt 19163  T

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Target: scaffold0034 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 262
Target Start/End: Complemental strand, 72747 - 72631
Alignment:
Q  145 taagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttg 244  Q
    |||||||||| |||||  ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||  ||||||| |||||||| |||| ||||||||||    
T  72747 taagcgagcaaaaccccaaccttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttg 72649  T
Q  245 cttcgtgcacgaggggac 262  Q
    |||||||||  |||||||    
T  72648 cttcgtgcattaggggac 72631  T

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Target: scaffold0001 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 177 - 308
Target Start/End: Original strand, 493650 - 493781
Alignment:
Q  177 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 275  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  493650 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 493748  T
Q  276 taaaatgtttcctttaacttgtataacccttgt 308  Q
    | ||||||||| |||| |||||||||| |||||    
T  493749 ttaaatgtttcttttagcttgtataactcttgt 493781  T

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Target: scaffold1061 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 1813 - 1712
Alignment:
Q  198 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 295  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||| || |||||||| |||||| | | ||||||||| ||||||||||| || |||||    
T  1813 gtcgcttaagcgaagatga-ccttagtcagccactttttgaatttt-gcctcgtgcactaggggatccttttgagcattttaaaatgtttctttcaactt 1716  T
Q  296 gtat 299  Q
    ||||    
T  1715 gtat 1712  T

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Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 51657 - 51552
Alignment:
Q  198 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 296  Q
    |||||||||||||||   | ||||||||||| ||||||||||||| |||| |||||| |||| | | | ||||||||| ||||||||||| || ||||||    
T  51657 gtcgcttaagcgaagaaggtcttagtcagccactttttgaatttt-gctttgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttg 51559  T
Q  297 tataacc 303  Q
    |||||||    
T  51558 tataacc 51552  T

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Target: scaffold0720 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 262
Target Start/End: Original strand, 3831 - 3966
Alignment:
Q  127 gttcgctcaagcgaaccctaagcgagc-agaacccagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtca 225  Q
    ||||||||||||||||| | ||||||| || |||   || || ||| ||| ||||||||||| || ||| |  ||||||||||||| ||||| |||||||    
T  3831 gttcgctcaagcgaaccgtgagcgagcgaggacctcaactttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagcattagtca 3930  T
Q  226 gcctctttttgaatttttgcttcgtgcacgaggggac 262  Q
    |||| ||||||||   ||||||||||||| |||||||    
T  3931 gcctttttttgaa-ccttgcttcgtgcactaggggac 3966  T

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Target: scaffold0483 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 11631 - 11715
Alignment:
Q  177 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 262  Q
    ||||||||||| |||||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||| ||||| |||||||    
T  11631 ggtcgcttaagcgaactacccttcgcttaagcgagctgagccttagtcagcctctatctgaa-ctttgcttcatgcactaggggac 11715  T

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Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 18121 - 18060
Alignment:
Q  177 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 238  Q
    ||||||||||| || ||| || ||||||||||||| ||||||||||||||||| ||| ||||    
T  18121 ggtcgcttaagcgagctacctttcgcttaagcgaactgagccttagtcagcctttttctgaa 18060  T

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Target: scaffold0453 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 11196 - 11258
Alignment:
Q  199 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 262  Q
    ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||||    
T  11196 tcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggac 11258  T

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Target: scaffold0169 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 308
Target Start/End: Complemental strand, 6343 - 6302
Alignment:
Q  267 tgagcattctaaaatgtttcctttaacttgtataacccttgt 308  Q
    |||||||||||||||||||| || ||||||||||||| ||||    
T  6343 tgagcattctaaaatgtttctttcaacttgtataacctttgt 6302  T

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Target: scaffold0023 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 193
Target Start/End: Complemental strand, 134924 - 134867
Alignment:
Q  136 agcgaaccctaagcgagcagaacccagaccttctgtaagccggtcgcttaagtgaact 193  Q
    ||||| || ||||||| | |||||||||||| |||||||| ||||||||||| |||||    
T  134924 agcgacccgtaagcgaactgaacccagacctactgtaagctggtcgcttaagcgaact 134867  T

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Target: scaffold0023; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 134882 - 134820
Alignment:
Q  198 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 262  Q
    |||||||||||||| ||||| ||||||||||| ||| |||| | ||||||||||||| |||||||    
T  134882 gtcgcttaagcgaactgagcgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggggac 134820  T

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Target: scaffold0924 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 1343 - 1391
Alignment:
Q  95 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 143  Q
    |||||||||||||  ||||||||||||   |||||||||||||||||||    
T  1343 gtgagcgaaaaacaattttgattctgtccaaagttcgctcaagcgaacc 1391  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 49645 - 49597
Alignment:
Q  95 gtgagcgaaaaaccgttttgattctgttagaagttcgctcaagcgaacc 143  Q
    |||||||||||||| ||||||||||||   |||||||||||| ||||||    
T  49645 gtgagcgaaaaaccattttgattctgtccaaagttcgctcaatcgaacc 49597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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