View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_8 (Length: 569)
Name: NF0784_low_8
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 57 - 569
Target Start/End: Original strand, 7947928 - 7948440
Alignment:
| Q |
57 |
atcctctttgtcttcatgagtgagatggtgacttgattggtactagttcgnnnnnnncatatgggaaaacgaatgagtcaacaaaactcaactcatattc |
156 |
Q |
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| T |
7947928 |
atcctctttgtcttcatgagtgagacggtgacttgattgatactagttcgaaaaaaacatatgggaaaacgaatgagccaacaaaactcaactcatattc |
7948027 |
T |
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| Q |
157 |
gtttttctatgttttggtagaacacgcaccaatcaagtcaccatatcacctatgacagcaacgatgactgcgattttctacttccaagagcaacatcggt |
256 |
Q |
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| T |
7948028 |
gtttttctatgttttggtagaacacgcaccaatcaagtcaccatatcacctatgacagcaacgatgactgtgattttctacttccaagatcaacatcggt |
7948127 |
T |
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| Q |
257 |
tgtcattggtatctctacgataattttcaagtggtctaccgtagaaccagcctgttttttggggagaaaagttttatttcttacagtaactaagtcacta |
356 |
Q |
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| T |
7948128 |
tgtcattggtatctctacgataattttcaagtggtctaccgtagaaccagcctgttttttggggagaaaagttttatttcttacagtaactaagtcacta |
7948227 |
T |
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| Q |
357 |
gctcaattgcagaattcaactgtattcccacttggggaaaaacctaggagtgctgtaacatcgacacaatccgttaaactcctcacaagaatggagcaac |
456 |
Q |
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| T |
7948228 |
gcacaattgcagaattcaactgtattcccacttggggaaaaacctaggagtgctgtaacatcgacacaatccgttaaactcctcacaagaatggagcaac |
7948327 |
T |
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| Q |
457 |
tgagactgttaaccaaggcagagaaagcaggtttattatcggcagccgagaaagcaggattatctctctcaacaatagagaaacttggtctcctttcaaa |
556 |
Q |
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| T |
7948328 |
tgagactgttaaccaaggcagagaaagcaggtttattatcggcagccgagaaagcaggattatctctctcaacaatagagaaacttggtctcctttcaaa |
7948427 |
T |
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| Q |
557 |
agcagaagaactt |
569 |
Q |
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| T |
7948428 |
agcagaagaactt |
7948440 |
T |
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