View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_86 (Length: 296)

Name: NF0784_low_86
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_86
NF0784_low_86
[»] chr7 (3 HSPs)
chr7 (61-153)||(26880662-26880754)
chr7 (73-167)||(40251754-40251848)
chr7 (176-210)||(26880754-26880788)
[»] chr6 (9 HSPs)
chr6 (225-296)||(26631781-26631852)
chr6 (225-296)||(26737756-26737827)
chr6 (225-291)||(26890772-26890838)
chr6 (225-291)||(26853984-26854050)
chr6 (225-291)||(27713858-27713924)
chr6 (225-291)||(27651953-27652018)
chr6 (228-281)||(26966429-26966482)
chr6 (229-296)||(27422304-27422371)
chr6 (225-276)||(31289579-31289630)
[»] scaffold0349 (1 HSPs)
scaffold0349 (225-291)||(18020-18086)
[»] chr8 (1 HSPs)
chr8 (225-291)||(29269724-29269790)
[»] scaffold0003 (1 HSPs)
scaffold0003 (229-296)||(64992-65059)


Alignment Details
Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 26880662 - 26880754
Alignment:
Q  61 aagagtttatggaaatgaacatacctatgcctcccatataaactctcaagctgagaaacaaatttagcaaagcatcgcactccattgccacat 153  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26880662 aagagtttatggaaatgaacatacctatgcctcccctataaactctcaagctgagaaacaaatttagcaaagcatcgcactccattgccacat 26880754  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 40251754 - 40251848
Alignment:
Q  73 aaatgaacatacctatgcctcccatataaactctcaagctgagaaacaaatttagcaaagcatcgcactccattgccacatatcaaaggacaaag 167  Q
    ||||||||| |||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||| ||||    
T  40251754 aaatgaacaaacctgtgcctcccatgtaaactctcaagctgagaaacaaatttggcaaagcatcgcactccattgccacacatctaaggaaaaag 40251848  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 26880754 - 26880788
Alignment:
Q  176 tgcatgaatgtaagaaacaaagcaaacttgtcagt 210  Q
    |||||||||||||||||||||||||||||||||||    
T  26880754 tgcatgaatgtaagaaacaaagcaaacttgtcagt 26880788  T

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Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 26631781 - 26631852
Alignment:
Q  225 tgtgattaacaaggtattcttgtgtaaaaacacttttctgccaaatcagttttctgagacagaacttttgtc 296  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  26631781 tgtgattaataaggtattcttgtgtaaaaacacttttctcccaaatctgttttctgagacagaacttgtgtc 26631852  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 26737756 - 26737827
Alignment:
Q  225 tgtgattaacaaggtattcttgtgtaaaaacacttttctgccaaatcagttttctgagacagaacttttgtc 296  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  26737756 tgtgattaataaggtattcttgtgtaaaaacacttttctcccaaatctgttttctgagacagaacttgtgtc 26737827  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 26890772 - 26890838
Alignment:
Q  225 tgtgattaacaaggtattcttgtgtaaaaacacttttctgccaaatcagttttctgagacagaactt 291  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26890772 tgtgattaataagttattcttttgtaaaaacacttttctgccaaatcagttttctgagacagaactt 26890838  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 26853984 - 26854050
Alignment:
Q  225 tgtgattaacaaggtattcttgtgtaaaaacacttttctgccaaatcagttttctgagacagaactt 291  Q
    ||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  26853984 tgtgattaataagttattcttgtgtaaaaacaattttctgccaagtcagttttctgagacagaactt 26854050  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 27713924 - 27713858
Alignment:
Q  225 tgtgattaacaaggtattcttgtgtaaaaacacttttctgccaaatcagttttctgagacagaactt 291  Q
    ||||||||  ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  27713924 tgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcagttttctgagacagaactt 27713858  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 27652018 - 27651953
Alignment:
Q  225 tgtgattaacaaggtattcttgtgtaaaaacacttttctgccaaatcagttttctgagacagaactt 291  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  27652018 tgtgattaataagttattcatgtgtaaaaacacttttctgccaaatcagtttt-tgagacagaactt 27651953  T

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Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 26966429 - 26966482
Alignment:
Q  228 gattaacaaggtattcttgtgtaaaaacacttttctgccaaatcagttttctga 281  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  26966429 gattaataaggtattcttgtgtaaaaacactttgctgccaaatcagttttctga 26966482  T

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Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 296
Target Start/End: Complemental strand, 27422371 - 27422304
Alignment:
Q  229 attaacaaggtattcttgtgtaaaaacacttttctgccaaatcagttttctgagacagaacttttgtc 296  Q
    ||||| ||||||||||||||||||| || ||||||||||||||| |||||||  ||||||||| ||||    
T  27422371 attaataaggtattcttgtgtaaaagcagttttctgccaaatcatttttctgcaacagaacttgtgtc 27422304  T

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Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 276
Target Start/End: Original strand, 31289579 - 31289630
Alignment:
Q  225 tgtgattaacaaggtattcttgtgtaaaaacacttttctgccaaatcagttt 276  Q
    ||||||||| ||||||||||||||||||||||||| |||||||  |||||||    
T  31289579 tgtgattaataaggtattcttgtgtaaaaacacttctctgccagttcagttt 31289630  T

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Target: scaffold0349 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 18020 - 18086
Alignment:
Q  225 tgtgattaacaaggtattcttgtgtaaaaacacttttctgccaaatcagttttctgagacagaactt 291  Q
    ||||||||  ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  18020 tgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcagttttctgagacagaactt 18086  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 29269790 - 29269724
Alignment:
Q  225 tgtgattaacaaggtattcttgtgtaaaaacacttttctgccaaatcagttttctgagacagaactt 291  Q
    ||||||||  ||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||||    
T  29269790 tgtgattattaagttattcttgtgtaaaaacacttctctgccaaatcacttttcagagacagaactt 29269724  T

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Target: scaffold0003 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 229 - 296
Target Start/End: Original strand, 64992 - 65059
Alignment:
Q  229 attaacaaggtattcttgtgtaaaaacacttttctgccaaatcagttttctgagacagaacttttgtc 296  Q
    ||||| ||||||||||||||||||| || ||||||||||||||| |||||||  ||||||||| ||||    
T  64992 attaataaggtattcttgtgtaaaagcagttttctgccaaatcatttttctgcaacagaacttgtgtc 65059  T

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