View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_89 (Length: 291)
Name: NF0784_low_89
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_89 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 269
Target Start/End: Complemental strand, 28607010 - 28606767
Alignment:
| Q |
13 |
aatatgacttgaatccttatcaaacggatcaacttttactattaaaaaagacatacgatagttacaacttcacactacactcacaaatcttttgaaggtt |
112 |
Q |
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| T |
28607010 |
aatatgacttgaatccttatcaaacggatcaacttttactattaaaaaagacatacgatagttacaacttcacactacactcacaaatcttttgaaggtt |
28606911 |
T |
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| Q |
113 |
ttgtcatgatgaagtaacatatctgtgattaacttaaaagaaagtaccagcaaatttaagcccgatggaactaattgttgtttacaaagctaattggcat |
212 |
Q |
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| T |
28606910 |
ttgtcatgatgaagtaacatatctgtgaataacttaaaagaaagtaccagcaaattta-------------taattgttgtttacaaagctaattggcat |
28606824 |
T |
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| Q |
213 |
taacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattct |
269 |
Q |
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| T |
28606823 |
taacgtaacggcaatcctttctaatttcaccttgatctccaataagaggattattct |
28606767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 28664189 - 28664122
Alignment:
| Q |
202 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattct |
269 |
Q |
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| T |
28664189 |
ctaattggcattaacgtaacgacaatcctttcgaatttcaccttgatctccggtaagaggattattct |
28664122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 28636619 - 28636552
Alignment:
| Q |
202 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattct |
269 |
Q |
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| T |
28636619 |
ctaattggcattaacgtatcgacaatcctttctgatttcaccttgatctccaataagaggattattct |
28636552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 202 - 269
Target Start/End: Complemental strand, 28657113 - 28657046
Alignment:
| Q |
202 |
ctaattggcattaacgtaacgacaatcctttctaatttcaccttgatctccagtaagaggattattct |
269 |
Q |
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|||||||||||||||| | |||||||||||||| |||||||||||||||||| ||||||||||||||| |
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| T |
28657113 |
ctaattggcattaacgaagcgacaatcctttctgatttcaccttgatctccaataagaggattattct |
28657046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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