View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_94 (Length: 284)

Name: NF0784_low_94
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_94
NF0784_low_94
[»] chr1 (1 HSPs)
chr1 (25-272)||(28606982-28607229)


Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 25 - 272
Target Start/End: Original strand, 28606982 - 28607229
Alignment:
Q  25 atccgtttgataaggattcaagtcatattgttcacttgcatcatccgtttaaatttatatgttgatatattatttaactatatgtcaataaaattcgaat 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28606982 atccgtttgataaggattcaagtcatattgttcacttgcatcatccgtttaaatttatatgttgatatattatttaactatatgtcaataaaattcgaat 28607081  T
Q  125 aatctgataaaatatgtaaaccacacttaattatttggattaatttggtaggatgctttttagaaaagcaatcgtcacacccagctaaaatgcatgatca 224  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607082 aatcttataaaatatgtaaaccacacttaattatttggattaatttggtaggatgctttttagaaaagcaatcgtcacacccagctaaaatgcatgatca 28607181  T
Q  225 agattttgtgcaagaaatacaagctttcaatttactcaagtttatatt 272  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||    
T  28607182 agatattgtgcaagaaatacaagctttcaatttactcaaatttatatt 28607229  T

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