View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0784_low_95 (Length: 282)

Name: NF0784_low_95
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0784_low_95
NF0784_low_95
[»] chr1 (3 HSPs)
chr1 (1-231)||(1461660-1461886)
chr1 (104-231)||(1497495-1497621)
chr1 (142-203)||(28626521-28626582)
[»] chr8 (1 HSPs)
chr8 (1-231)||(26789152-26789373)
[»] chr2 (1 HSPs)
chr2 (146-230)||(15868380-15868464)
[»] chr3 (1 HSPs)
chr3 (140-231)||(50275602-50275693)
[»] chr4 (1 HSPs)
chr4 (142-230)||(53076051-53076139)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 1461660 - 1461886
Alignment:
Q  1 gtttgctgagcgtggacttcgatcgttaggtgttgcttatcaggtaagtaaagatgatatcggctannnnnnnnnnnnncctttccgacttgaacgaatt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||              ||||||||||||||||||||    
T  1461660 gtttgctgaacgtggacttcgatcgttaggtgttgcttatcaggtaagtaaagatgatatcagctatttttttttt----ctttccgacttgaacgaatt 1461755  T
Q  101 cccttgttttatttttgcttgtattgtatgatttgtgtaaacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1461756 cccttgttttatttttgcttgtattgtatgatttgtgtaaacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggttt 1461855  T
Q  201 gttaccattgtttgatcctcctagacatgat 231  Q
    |||||||||||||||||||||||||||||||    
T  1461856 gttaccattgtttgatcctcctagacatgat 1461886  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 1497621 - 1497495
Alignment:
Q  104 ttgttttatttttgcttgtattgtatgatttgtgtaaacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgtt 203  Q
    |||||||||  |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| || |    
T  1497621 ttgttttataattgcttgtattgtatgatttgtgtaa-caggaggtacctgagagaacaaaagatagtcctggtggaccatggcaatttgtcggtctgct 1497523  T
Q  204 accattgtttgatcctcctagacatgat 231  Q
    ||| |||||||||||||| || ||||||    
T  1497522 accgttgtttgatcctccaaggcatgat 1497495  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 28626521 - 28626582
Alignment:
Q  142 caggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgtt 203  Q
    |||||||| ||||||| ||| ||||| || |||||||| || ||||| ||||||||||||||    
T  28626521 caggaagttcctgagaaaactaaagaaagccctggtgctccttggcagtttgttggtttgtt 28626582  T

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Target: chr8 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 26789152 - 26789373
Alignment:
Q  1 gtttgctgagcgtggacttcgatcgttaggtgttgcttatcaggtaagtaaagatgatatcggctannnnnnnnnnnnncctttccgacttgaacgaatt 100  Q
    ||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| ||||               ||| | |||||||||||||    
T  26789152 gtttgctgagcgtggacttcgatcgctcggtgttgcttgtcaggtaagtaaagatgatatcagctatgtttag--------ttttctacttgaacgaatt 26789243  T
Q  101 cccttgttttatttttgcttgtattgtatgatttgtgtaaacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggttt 200  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26789244 cccttgttttattttttcttgtattgtatgatttgtgtaa-caggaagtacctgagagaacaaaagatggtcctggtgcaccatggcaatttgttggttt 26789342  T
Q  201 gttaccattgtttgatcctcctagacatgat 231  Q
    ||||||| | |||||||||||||| ||||||    
T  26789343 gttaccactatttgatcctcctaggcatgat 26789373  T

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Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 15868380 - 15868464
Alignment:
Q  146 aagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgttaccattgtttgatcctcctagacatga 230  Q
    |||| ||||||| ||||||||| ||| ||||||| |||||||||||||||||||||||  || |||||||||||||||| |||||    
T  15868380 aagttcctgagaaaacaaaagaaagtgctggtgctccatggcaatttgttggtttgttgtcagtgtttgatcctcctaggcatga 15868464  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 231
Target Start/End: Original strand, 50275602 - 50275693
Alignment:
Q  140 aacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgttaccattgtttgatcctcctagacatgat 231  Q
    |||||||| ||||||||| |   |||||||| ||||||||||||||||||||||||||| |||||||  | |||||||||||||| ||||||    
T  50275602 aacaggaaatacctgagaaagataaagatagccctggtgcaccatggcaatttgttggtctgttacctctatttgatcctcctaggcatgat 50275693  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 230
Target Start/End: Complemental strand, 53076139 - 53076051
Alignment:
Q  142 caggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgttaccattgtttgatcctcctagacatga 230  Q
    |||||||| ||||||| ||| ||||| || |||||||| || ||||| ||||||||||||||  || ||||||| || ||||| |||||    
T  53076139 caggaagttcctgagaaaactaaagaaagccctggtgctccttggcagtttgttggtttgttgtcactgtttgacccacctaggcatga 53076051  T

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