View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0784_low_97 (Length: 279)
Name: NF0784_low_97
Description: NF0784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0784_low_97 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 1461660 - 1461886
Alignment:
| Q |
1 |
gtttgctgagcgtggacttcgatcgttaggtgttgcttatcaggtaagtaaagatgatatcggctannnnnnnnnncctttccgacttgaacgaattccc |
100 |
Q |
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| T |
1461660 |
gtttgctgaacgtggacttcgatcgttaggtgttgcttatcaggtaagtaaagatgatatcagctattttttttttc-tttccgacttgaacgaattccc |
1461758 |
T |
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| Q |
101 |
ttgttttatttttgcttgtattgtatgatttgtgtaaacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1461759 |
ttgttttatttttgcttgtattgtatgatttgtgtaaacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgtt |
1461858 |
T |
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| Q |
201 |
accattgtttgatcctcctagacatgat |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1461859 |
accattgtttgatcctcctagacatgat |
1461886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 1497621 - 1497495
Alignment:
| Q |
101 |
ttgttttatttttgcttgtattgtatgatttgtgtaaacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgtt |
200 |
Q |
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| T |
1497621 |
ttgttttataattgcttgtattgtatgatttgtgtaa-caggaggtacctgagagaacaaaagatagtcctggtggaccatggcaatttgtcggtctgct |
1497523 |
T |
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| Q |
201 |
accattgtttgatcctcctagacatgat |
228 |
Q |
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| T |
1497522 |
accgttgtttgatcctccaaggcatgat |
1497495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 200
Target Start/End: Original strand, 28626521 - 28626582
Alignment:
| Q |
139 |
caggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgtt |
200 |
Q |
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| T |
28626521 |
caggaagttcctgagaaaactaaagaaagccctggtgctccttggcagtttgttggtttgtt |
28626582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 26789152 - 26789373
Alignment:
| Q |
1 |
gtttgctgagcgtggacttcgatcgttaggtgttgcttatcaggtaagtaaagatgatatcggctannnnnnnnnncctttccgacttgaacgaattccc |
100 |
Q |
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||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| |||| ||| | |||||||||||||||| |
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| T |
26789152 |
gtttgctgagcgtggacttcgatcgctcggtgttgcttgtcaggtaagtaaagatgatatcagctatgtttag-----ttttctacttgaacgaattccc |
26789246 |
T |
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| Q |
101 |
ttgttttatttttgcttgtattgtatgatttgtgtaaacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgtt |
200 |
Q |
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| T |
26789247 |
ttgttttattttttcttgtattgtatgatttgtgtaa-caggaagtacctgagagaacaaaagatggtcctggtgcaccatggcaatttgttggtttgtt |
26789345 |
T |
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| Q |
201 |
accattgtttgatcctcctagacatgat |
228 |
Q |
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|||| | |||||||||||||| |||||| |
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| T |
26789346 |
accactatttgatcctcctaggcatgat |
26789373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 227
Target Start/End: Original strand, 15868380 - 15868464
Alignment:
| Q |
143 |
aagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgttaccattgtttgatcctcctagacatga |
227 |
Q |
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|||| ||||||| ||||||||| ||| ||||||| ||||||||||||||||||||||| || |||||||||||||||| ||||| |
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| T |
15868380 |
aagttcctgagaaaacaaaagaaagtgctggtgctccatggcaatttgttggtttgttgtcagtgtttgatcctcctaggcatga |
15868464 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 228
Target Start/End: Original strand, 50275602 - 50275693
Alignment:
| Q |
137 |
aacaggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgttaccattgtttgatcctcctagacatgat |
228 |
Q |
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|||||||| ||||||||| | |||||||| ||||||||||||||||||||||||||| ||||||| | |||||||||||||| |||||| |
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| T |
50275602 |
aacaggaaatacctgagaaagataaagatagccctggtgcaccatggcaatttgttggtctgttacctctatttgatcctcctaggcatgat |
50275693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 227
Target Start/End: Complemental strand, 53076139 - 53076051
Alignment:
| Q |
139 |
caggaagtacctgagagaacaaaagatagtcctggtgcaccatggcaatttgttggtttgttaccattgtttgatcctcctagacatga |
227 |
Q |
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|||||||| ||||||| ||| ||||| || |||||||| || ||||| |||||||||||||| || ||||||| || ||||| ||||| |
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| T |
53076139 |
caggaagttcctgagaaaactaaagaaagccctggtgctccttggcagtttgttggtttgttgtcactgtttgacccacctaggcatga |
53076051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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