View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0786_high_1 (Length: 483)

Name: NF0786_high_1
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0786_high_1
NF0786_high_1
[»] chr8 (3 HSPs)
chr8 (33-459)||(45311791-45312215)
chr8 (212-272)||(11623345-11623405)
chr8 (208-283)||(13111860-13111936)
[»] chr6 (1 HSPs)
chr6 (39-332)||(24207758-24208044)
[»] chr4 (9 HSPs)
chr4 (98-286)||(20136087-20136277)
chr4 (53-155)||(29540192-29540290)
chr4 (110-154)||(10119159-10119203)
chr4 (206-294)||(21015095-21015182)
chr4 (96-148)||(24914741-24914793)
chr4 (206-257)||(29540084-29540135)
chr4 (203-241)||(10119091-10119129)
chr4 (213-261)||(24914861-24914909)
chr4 (52-142)||(35849964-35850050)
[»] chr1 (6 HSPs)
chr1 (190-287)||(15742020-15742117)
chr1 (39-156)||(15741700-15741812)
chr1 (212-251)||(19020110-19020149)
chr1 (206-272)||(42066890-42066956)
chr1 (210-250)||(13108921-13108961)
chr1 (210-250)||(13184087-13184127)
[»] chr3 (4 HSPs)
chr3 (194-283)||(49322395-49322484)
chr3 (206-272)||(30818163-30818229)
chr3 (210-284)||(34366029-34366102)
chr3 (127-182)||(28433521-28433577)
[»] scaffold0758 (1 HSPs)
scaffold0758 (29-334)||(5122-5412)
[»] scaffold0027 (1 HSPs)
scaffold0027 (194-283)||(25476-25566)
[»] chr5 (4 HSPs)
chr5 (206-283)||(3375611-3375687)
chr5 (206-283)||(3400675-3400751)
chr5 (190-313)||(36226608-36226726)
chr5 (206-257)||(33093410-33093461)
[»] chr2 (8 HSPs)
chr2 (208-313)||(25658869-25658974)
chr2 (96-156)||(7713952-7714012)
chr2 (212-272)||(42962707-42962767)
chr2 (62-155)||(7718957-7719046)
chr2 (116-158)||(12364078-12364120)
chr2 (98-156)||(38205280-38205338)
chr2 (218-270)||(11929322-11929374)
chr2 (214-302)||(45324172-45324260)
[»] chr7 (1 HSPs)
chr7 (212-272)||(687000-687060)


Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 33 - 459
Target Start/End: Original strand, 45311791 - 45312215
Alignment:
Q  33 tctaaccattttatgtattgatataatagaacatattgatgtagacatactattattaatgacactttgcatctagtaatgctcgtaagaattattttgt 132  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||| |||||||||||||| |    
T  45311791 tctagccattttatgtattgatataatagaacatattgatgtagacatattattattaatgac--tttgcatctagtaatgcttgtaagaattattttat 45311888  T
Q  133 atgagcatttgaatatcaaataaacactcaatttttattataaattttgannnnnnngttggataatatatttacgtagtaaaaactatcatcttcaaac 232  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||    
T  45311889 ataagcatttgaatatcaaataaacactcaatttttattataaattttgatttttttgttggataatatatttacgtagtaaaaactatcatcttcaaac 45311988  T
Q  233 aaattatttccacactttaaaaatttaaactttttatataatcattatttaaaatctaaattgttggtttgctttaggccaactaaaatcttataaacgg 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  45311989 aaattatttccacactttaaaaatttaaactttttatataatcattatttaaaatctaaattgttggtttgctttgggccaactaaaatcttataaacgg 45312088  T
Q  333 ccctgtttagaactacaatattttttaaattgttttacattaaatttccacccaaaaagtgacaattcacaagcatatagagtatgaacgtttcaaacac 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  45312089 ccctgtttagaactacaatattttttaaattgttttacattaaatttccacccaaaaagtgacaattcacaagcgtatagagtatgaacgtttcaaacac 45312188  T
Q  433 atactattaattataaattctgtgatg 459  Q
    |||||||||||||||||||||||||||    
T  45312189 atactattaattataaattctgtgatg 45312215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 11623405 - 11623345
Alignment:
Q  212 taaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatata 272  Q
    ||||||||||| ||||||| |||||||||| |||||||| |||||||||| ||||||||||    
T  11623405 taaaaactatcctcttcaagcaaattattttcacactttgaaaatttaaattttttatata 11623345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 13111860 - 13111936
Alignment:
Q  208 gtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatttaa-actttttatataatcattattta 283  Q
    ||||| ||||||||| |||||||||||||||||| |||||||| |||||||||   |||||||||| ||||||||||    
T  13111860 gtagtgaaaactatcctcttcaaacaaattattttcacactttgaaaatttaattttttttatatactcattattta 13111936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 9e-71; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 39 - 332
Target Start/End: Original strand, 24207758 - 24208044
Alignment:
Q  39 cattttatgtattgatataatagaacatattgatgtagacatactattattaatgacactttgcatctagtaatgctcgtaagaattattttgtatgagc 138  Q
    |||||||||||||||||| ||| ||||||||||||||| ||||   |||||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  24207758 cattttatgtattgatatgataaaacatattgatgtaggcata---ttattaatgac--tttgcatctagaaatgctcgtaagaattattttgtatgagc 24207852  T
Q  139 atttgaatatcaaataaacactcaatttttattataaattttgannnnnnngttggataatatatttacgtagtaaaaactatcatcttcaaacaaatta 238  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||       |||||||||||||||||||||||||||| || | ||| ||| | |||||    
T  24207853 atttgaatatcaaataaa-actcaatttttgttatgaattttgatgtttttgttggataatatatttacgtagtaaaaattaacctctacaagcgaatta 24207951  T
Q  239 tttccacactttaaaaatttaaactttttatataatcattatttaaaatctaaattgttggtttgctttaggccaactaaaatcttataaacgg 332  Q
    |||  |||||||  ||||||||||||||||||||||||||||||| |||  ||||| | |||| | |||||||| || ||||||||||||||||    
T  24207952 tttttacactttggaaatttaaactttttatataatcattatttagaattcaaattataggttcgttttaggcc-accaaaatcttataaacgg 24208044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 98 - 286
Target Start/End: Original strand, 20136087 - 20136277
Alignment:
Q  98 tttgcatctagtaatgctcgtaagaattattttgtatgagcatttgaatatcaaataaacactcaatttttattataaattttgannnnnnngttggata 197  Q
    ||||||||||| ||  | |||||||||||||||  |||| ||||| ||||| ||||||| ||||||||||| |||| ||||||||       ||||||||    
T  20136087 tttgcatctagaaaaacccgtaagaattatttttaatgaacatttaaatattaaataaaaactcaatttttgttatgaattttgatgtttttgttggata 20136186  T
Q  198 atatattt--acgtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatataatcattatttaaaa 286  Q
    |||||| |  ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| | |||||||||||| |||||||||||    
T  20136187 atatatattaacgtagtaaaaactatcctcttcaaacaaattattttcacactttaaaaatttatattttttatataattattatttaaaa 20136277  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 53 - 155
Target Start/End: Complemental strand, 29540290 - 29540192
Alignment:
Q  53 atataatagaacatattgatgtagacatactattattaatgacactttgcatctagtaatgctcgtaagaattattttgtatgagcatttgaatatcaaa 152  Q
    |||| |||||| ||||||||||||||| |  ||||||||||||  ||||||||||| ||| || ||| ||||||||||||||||| |||| ||||| |||    
T  29540290 atatgatagaatatattgatgtagacaca--attattaatgac--tttgcatctagaaatacttgtatgaattattttgtatgagtatttaaatattaaa 29540195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 10119203 - 10119159
Alignment:
Q  110 aatgctcgtaagaattattttgtatgagcatttgaatatcaaata 154  Q
    |||||||||| |||||||||||||||||||||| ||||| |||||    
T  10119203 aatgctcgtaggaattattttgtatgagcatttcaatattaaata 10119159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 206 - 294
Target Start/End: Original strand, 21015095 - 21015182
Alignment:
Q  206 acgtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatataatcattatttaaaatctaaatt 294  Q
    ||||||||||||||||  ||||||| ||||||  || |||||||| |||||||||| ||| |||||| || ||||||| |||| |||||    
T  21015095 acgtagtaaaaactatactcttcaagcaaattgctttcacactttgaaaatttaaaatttgtatatactc-ttatttagaatccaaatt 21015182  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 24914741 - 24914793
Alignment:
Q  96 actttgcatctagtaatgctcgtaagaattattttgtatgagcatttgaatat 148  Q
    ||||||||| ||| |||||||||| ||||| |||||||||| |||||||||||    
T  24914741 actttgcatatagaaatgctcgtaggaattgttttgtatgaacatttgaatat 24914793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 29540135 - 29540084
Alignment:
Q  206 acgtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatt 257  Q
    ||||| |||||| |||| |||||||||||||||||| |||||||||| ||||    
T  29540135 acgtaataaaaattatcttcttcaaacaaattattttcacactttaagaatt 29540084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 241
Target Start/End: Complemental strand, 10119129 - 10119091
Alignment:
Q  203 tttacgtagtaaaaactatcatcttcaaacaaattattt 241  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  10119129 tttacgtaataaaaactataatcttcaaacaaattattt 10119091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 24914861 - 24914909
Alignment:
Q  213 aaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaa 261  Q
    |||||||||||| ||||| |||||||||| || |||||| |||||||||    
T  24914861 aaaaactatcattttcaagcaaattattttcagactttagaaatttaaa 24914909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 35850050 - 35849964
Alignment:
Q  52 gatataatagaacatattgatgtagacatactattattaatgacactttgcatctagtaatgctcgtaagaattattttgtatgagcattt 142  Q
    ||||| |||||||||| || |||||||| |  ||||||||||||  ||||||||||  |||| | ||| ||||||||||||| ||||||||    
T  35850050 gatatgatagaacataatgctgtagacaca--attattaatgac--tttgcatctaaaaatgtttgtatgaattattttgtacgagcattt 35849964  T

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Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 190 - 287
Target Start/End: Original strand, 15742020 - 15742117
Alignment:
Q  190 gttggataatatatttacgtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatataatcattatttaaaat 287  Q
    ||||||||||||||| || |||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||    
T  15742020 gttggataatatattaacatagtaaaaactatcctcttcgaacaaattattttcacactttaaaaatttaaattttttatataatccttatttaaaat 15742117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 156
Target Start/End: Original strand, 15741700 - 15741812
Alignment:
Q  39 cattttatgtattgatataatagaacatattgatgtagacatactattattaatgacactttgcatctagtaatgctcgtaagaattattttgtatgagc 138  Q
    |||||||||||||||||| ||| ||||||||||||||||||||   |||||||||||  || |||||||| |||||| ||||||||| ||||||||||||    
T  15741700 cattttatgtattgatatgataaaacatattgatgtagacata---ttattaatgac--ttagcatctagaaatgctggtaagaattgttttgtatgagc 15741794  T
Q  139 atttgaatatcaaataaa 156  Q
    |||||||||| |||||||    
T  15741795 atttgaatattaaataaa 15741812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 19020149 - 19020110
Alignment:
Q  212 taaaaactatcatcttcaaacaaattatttccacacttta 251  Q
    |||||||||||||||||||||||||||||| || ||||||    
T  19020149 taaaaactatcatcttcaaacaaattattttcaaacttta 19020110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 272
Target Start/End: Complemental strand, 42066956 - 42066890
Alignment:
Q  206 acgtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatata 272  Q
    ||||| |||||||||||||||||||  ||||||||| |||||||||  |||| ||  ||||||||||    
T  42066956 acgtaataaaaactatcatcttcaagaaaattattttcacactttagcaattcaatttttttatata 42066890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 13108961 - 13108921
Alignment:
Q  210 agtaaaaactatcatcttcaaacaaattatttccacacttt 250  Q
    |||||||| |||| |||||||||||||||||| ||||||||    
T  13108961 agtaaaaattatcctcttcaaacaaattattttcacacttt 13108921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 13184087 - 13184127
Alignment:
Q  210 agtaaaaactatcatcttcaaacaaattatttccacacttt 250  Q
    |||||||| |||| |||||||||||||||||| ||||||||    
T  13184087 agtaaaaattatcctcttcaaacaaattattttcacacttt 13184127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 194 - 283
Target Start/End: Original strand, 49322395 - 49322484
Alignment:
Q  194 gataatatatttacgtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatataatcattattta 283  Q
    ||||||||||| |||||||||||  |||||| ||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  49322395 gataatatattaacgtagtaaaatttatcattttcaagcaaattatttccacactttaaaaattttaactttttatgtaatcattattta 49322484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 30818163 - 30818229
Alignment:
Q  206 acgtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatata 272  Q
    ||||| |||||| |||||||||||| ||||||| ||  ||||||| |||||| ||| ||||||||||    
T  30818163 acgtaataaaaattatcatcttcaatcaaattacttttacactttgaaaattcaaattttttatata 30818229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 34366029 - 34366102
Alignment:
Q  210 agtaaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatataatcattatttaa 284  Q
    |||||||||| || ||||||| |||| ||||| || |||||| ||||||||  |||||||||| |||||||||||    
T  34366029 agtaaaaactttcttcttcaagcaaactattttcatactttagaaatttaat-tttttatatactcattatttaa 34366102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 28433577 - 28433521
Alignment:
Q  127 ttttgtatgagcatttgaatatcaaat-aaacactcaatttttattataaattttga 182  Q
    |||||||| ||||||||||||| |||| ||| ||||||||||| |||| ||||||||    
T  28433577 ttttgtataagcatttgaatattaaataaaaaactcaattttttttatgaattttga 28433521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 334
Target Start/End: Original strand, 5122 - 5412
Alignment:
Q  29 atggtctaaccattttatgtattgatataatagaacatattgatgtagacatactattattaatgacactttgcatctagtaatgctcgtaagaattatt 128  Q
    |||||||| ||||||||||||||||||| | |||||||||||||||||||  |   | |||| ||||  ||||||||||| |||||||||||||||  ||    
T  5122 atggtctagccattttatgtattgatatgaaagaacatattgatgtagacgca---taattagtgac--tttgcatctagaaatgctcgtaagaatagtt 5216  T
Q  129 ttgtatgagcatttgaatatcaaataaacactcaatttttattataaattttgannnnnnngttggataatatattt--acgtagtaaaaactatcatct 226  Q
    |||||| | ||||| ||||| ||||||||||||||   || |||| ||||||||       ||| || ||||||| |  || |||||||| |      ||    
T  5217 ttgtatcaccattttaatattaaataaacactcaaaaatt-ttatgaattttgatgtttttgttagaaaatatatattaacctagtaaaatc------ct 5309  T
Q  227 tcaaacaaattatttccacactttaaaaatttaaactttttatataatcattatttaaaatctaaattgttggtttgctttaggccaactaaaatcttat 326  Q
    | ||     |||||| ||||||||| |||||||||| ||||||||||| |||||||| || ||||||||| |||| | | || ||| |||||||||| ||    
T  5310 tgaag----ttattttcacactttagaaatttaaacgttttatataattattatttagaacctaaattgtaggttcgttctaagcc-actaaaatctcat 5404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 194 - 283
Target Start/End: Complemental strand, 25566 - 25476
Alignment:
Q  194 gataatatatttacgtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaact-ttttatataatcattattta 283  Q
    |||||| | |||||||||||||||| ||||||||||| |||||||||| ||||||||  ||| ||||||| ||||||||| || |||||||    
T  25566 gataatttctttacgtagtaaaaacaatcatcttcaagcaaattattttcacactttggaaagttaaacttttttatatactctttattta 25476  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 3375611 - 3375687
Alignment:
Q  206 acgtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatataatcattattta 283  Q
    |||||| |||||||||||||||||||||||||||||  |||||||| |||||| || |||||||||| || |||||||    
T  3375611 acgtagcaaaaactatcatcttcaaacaaattatttttacactttagaaatttgaa-tttttatatactctttattta 3375687  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 283
Target Start/End: Original strand, 3400675 - 3400751
Alignment:
Q  206 acgtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatataatcattattta 283  Q
    |||||| |||||||||||||||||||||||||||||  |||| ||| |||||| || |||||||||| || |||||||    
T  3400675 acgtagcaaaaactatcatcttcaaacaaattatttttacacgttagaaatttgaa-tttttatatactctttattta 3400751  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 313
Target Start/End: Original strand, 36226608 - 36226726
Alignment:
Q  190 gttggataatatatttacgtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatataatcattatttaaaatct 289  Q
    ||||||||||||| | |||||||| |   |||| |||||||||| ||||||| || |||||| || |||    |||||||||||||||| |||| |||||    
T  36226608 gttggataatatactaacgtagtatat--tatcctcttcaaacatattattttcagactttagaattttt---tttttatataatcattgtttagaatct 36226702  T
Q  290 aaattgttggtttgctttaggcca 313  Q
    ||||||| |||| | |||||||||    
T  36226703 aaattgtaggttcgttttaggcca 36226726  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 33093410 - 33093461
Alignment:
Q  206 acgtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatt 257  Q
    ||||| |||||||||||||||||||  ||||||||| ||||||||| |||||    
T  33093410 acgtaataaaaactatcatcttcaagaaaattattttcacactttagaaatt 33093461  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 313
Target Start/End: Original strand, 25658869 - 25658974
Alignment:
Q  208 gtagtaaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatataatcattatttaaaatctaaattgttggtttgcttt 307  Q
    ||||||||||| |||||| |||| |||||||||| ||||||||  ||||||||  |||||||||| ||||||| ||  | | ||||||| ||||||||||    
T  25658869 gtagtaaaaacaatcatcatcaagcaaattattttcacactttggaaatttaatttttttatatactcattatgtaggacccaaattgtaggtttgcttt 25658968  T
Q  308 aggcca 313  Q
    | ||||    
T  25658969 aagcca 25658974  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 156
Target Start/End: Original strand, 7713952 - 7714012
Alignment:
Q  96 actttgcatctagtaatgctcgtaagaattattttgtatgagcatttgaatatcaaataaa 156  Q
    ||||||||||||  |||||||||||||||   ||||||| ||||||||||||| |||||||    
T  7713952 actttgcatctaaaaatgctcgtaagaatagctttgtattagcatttgaatattaaataaa 7714012  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 42962767 - 42962707
Alignment:
Q  212 taaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatata 272  Q
    ||||||||||||  |||||| ||||||||| |||||||||| |||||||  ||||||||||    
T  42962767 taaaaactatcacattcaaagaaattattttcacactttaagaatttaatttttttatata 42962707  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 155
Target Start/End: Original strand, 7718957 - 7719046
Alignment:
Q  62 aacatattgatgtagacatactattattaatgacactttgcatctagtaatgctcgtaagaattattttgtatgagcatttgaatatcaaataa 155  Q
    ||||||||||||||| || |  ||||||||||||  ||||||||||  ||||||||||| |||  |||||||| ||||||| ||||| ||||||    
T  7718957 aacatattgatgtaggcaca--attattaatgac--tttgcatctaaaaatgctcgtaaaaatggttttgtattagcatttaaatattaaataa 7719046  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 12364078 - 12364120
Alignment:
Q  116 cgtaagaattattttgtatgagcatttgaatatcaaataaaca 158  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||    
T  12364078 cgtaaaaattattttgtatgaacatttgaatattaaataaaca 12364120  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 38205280 - 38205338
Alignment:
Q  98 tttgcatctagtaatgctcgtaagaattattttgtatgagcatttgaatatcaaataaa 156  Q
    ||||||||| | ||||||| || ||||| ||||||||||||||||| |||| |||||||    
T  38205280 tttgcatcttgaaatgctcataggaattgttttgtatgagcatttggatattaaataaa 38205338  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 11929322 - 11929374
Alignment:
Q  218 ctatcatcttcaaacaaattatttccacactttaaaaatttaaactttttata 270  Q
    |||||||||||||  ||||||||| ||||||||| ||||||||| ||| ||||    
T  11929322 ctatcatcttcaagtaaattattttcacactttagaaatttaaaatttatata 11929374  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 302
Target Start/End: Complemental strand, 45324260 - 45324172
Alignment:
Q  214 aaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatataatcattatttaaaatctaaattgttggttt 302  Q
    |||||||||||||| || ||||||||||  ||| |||| ||||| ||  |||||||||| |||||| ||| |||| |||| || |||||    
T  45324260 aaaactatcatcttaaagcaaattatttttacattttagaaattaaatttttttatatactcattacttagaatccaaatcgtaggttt 45324172  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 687060 - 687000
Alignment:
Q  212 taaaaactatcatcttcaaacaaattatttccacactttaaaaatttaaactttttatata 272  Q
    ||||||||||||||||||| ||||||| ||  |||||||||||| ||||| | ||||||||    
T  687060 taaaaactatcatcttcaagcaaattaattttacactttaaaaaattaaaatgtttatata 687000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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