View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_high_2 (Length: 457)
Name: NF0786_high_2
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 15 - 417
Target Start/End: Original strand, 35276891 - 35277293
Alignment:
| Q |
15 |
gggtgagtgctataaaagcaagtgagtgcaagtgctttcaacattctcttgctcattttcctcttcttgcaattccattccattattataggaagaagaa |
114 |
Q |
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| T |
35276891 |
gggtgagtgctataaaagcaagtgagtgcaagtgctttcaacattctcttgctcattttcctcttcttgcaattccattccattattataggaagaagaa |
35276990 |
T |
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| Q |
115 |
ggagatgggaaattgtcaagcaattgatgctgcaacactagtgatacaacacccaagtggcaaaacagagaaattttattcttctcttagtgctagccaa |
214 |
Q |
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| T |
35276991 |
ggagatgggaaattgtcaagcaattgatgctgcaacactagtgatacaacacccaagtggcaaaacagagaaattttattcttctcttagtgctagccaa |
35277090 |
T |
|
| Q |
215 |
gttatgaaaatgaatcctggtcattgtgttgctcttctcatctccaccacagtatatccaaacaaggacattcaaaattgctccaaaaataataatggtg |
314 |
Q |
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| T |
35277091 |
gttatgaaaatgaatcccggtcattgtgttgctcttctcatctccaccacagtatatccaaacaaggacattcaaaattgctccaaaaataataatggtg |
35277190 |
T |
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| Q |
315 |
acaccaaaaccaaccaagttcgattaactcgcataaagcttcttaaacctaatgatactcttcttcttggccatgtttatagactcatcacaactcaagg |
414 |
Q |
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| T |
35277191 |
acaccaaaaccaaccaagttcgattaactcgcataaagcttcttaaacctaatgatactctaattcttggtcatgtttatagactcatcacaactcaagg |
35277290 |
T |
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| Q |
415 |
tag |
417 |
Q |
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| T |
35277291 |
tag |
35277293 |
T |
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