View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_high_27 (Length: 208)
Name: NF0786_high_27
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 7021315 - 7021440
Alignment:
| Q |
1 |
aaaagtggagagatgctttggcaaaatctgccaatatttctggatttcattcaacacattttccgtaagtcttcnnnnnnnaattcataacatataaatt |
100 |
Q |
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| T |
7021315 |
aaaagtggagacatgctttgacaaaatctgccaatatttctggatttcattcaatacattttccgtaagtcttctttttttaattcataacatataaatt |
7021414 |
T |
|
| Q |
101 |
tttagatcatttggtcccttacactt |
126 |
Q |
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|||||||||||||| | ||||||||| |
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| T |
7021415 |
tttagatcatttggacacttacactt |
7021440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 7035644 - 7035689
Alignment:
| Q |
25 |
aatctgccaatatttctggatttcattcaacacattttccgtaagt |
70 |
Q |
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|
||||||||||||| ||||||||| ||||| |||||||||||||||| |
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| T |
7035644 |
aatctgccaatatgtctggatttgattcatcacattttccgtaagt |
7035689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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