View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0786_high_4 (Length: 453)
Name: NF0786_high_4
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 48203518 - 48203242
Alignment:
| Q |
30 |
ttatcgtcattacctctacaaatttttacagaagtatttttagcttttcaaagggtaaatgtatatatgttgacctctttttaccaaaattaggaataca |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48203518 |
ttatcgtcattacctctacaaatttttacagcagtatttttagcttttcaaagggtaaatgtatatatgttgacctctttttaccaaaattaggaataca |
48203419 |
T |
|
| Q |
130 |
tgtttttatcccatccttcaacacctaaattcaagcaaacattttcggattccttcctccaaaccaaagaaagcaaaagcttgctatttcttctcccact |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48203418 |
tgtttttatcccatccttcaacacctaaattcaagcaaacattttcggattccttcctccaaaccaaagaaagcaaaagcttgctatttcttctcccact |
48203319 |
T |
|
| Q |
230 |
tctaatttttcccttaggactttgcaggcagaggaaaccctctcagtcttcactcttcgttcaaattccagaatcct |
306 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48203318 |
tctaatttttccctcaggactttgcaggcagaggaaaccctctcagtcttcactcttcgttcaaattccagaatcct |
48203242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 373 - 442
Target Start/End: Complemental strand, 48203174 - 48203105
Alignment:
| Q |
373 |
tgaatgtttgtttgtcatgggaaggagagtacctcttggcaacatctcattaatacacccatttcttcat |
442 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
48203174 |
tgaatgtttgtttgtcatgggaaggagagtacctcttggtaacatctcattaatacacccatttcttcat |
48203105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6975 times since January 2019
Visitors: 5773