View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0786_high_5 (Length: 445)
Name: NF0786_high_5
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 6379498 - 6379162
Alignment:
| Q |
11 |
agaatattctagaacatagcaaacaactaagaaattgtgacagtaaggtaaggaattatgaaatgcccaaaaactaaaaacattgaattaataaatgaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6379498 |
agaatattctagaacatagcaaacaactaagaaattgtgacagtaagg-----aattatgaaatgcccaaaaactaaaaacattgaattaataaatgaag |
6379404 |
T |
|
| Q |
111 |
cgcattttgatcttatttttaaagttgaaacctgtaattctcaacttcaaacaacaaaaatatcttgcacgtaaaacagaaaaacaaaattaatctatct |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
6379403 |
cgcattttgatcttatttttaaagttgaaacctgtaattctcaacttcaaacaacaaaaatatctagcacgtaaaacagaaaaacaaaattcatctatct |
6379304 |
T |
|
| Q |
211 |
ataataagagaattgaatagcgaaggaaccaaccttgaagaaagaacgagggcgaaacttggcgttatcatagtcaacgtcttttctggagtagggtaga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6379303 |
ataataagagaattgaatagcgaaggaaccaaccttgaagaaagaacgagggcgaaacttggcgttatcatagtcaacgtcttttctggagtagggtaga |
6379204 |
T |
|
| Q |
311 |
gacttggacatagctggatccgatcagatccaaattaccaac |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6379203 |
gacttggacatagctggatccgatcagatccaaattaccaac |
6379162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6675 times since January 2019
Visitors: 5770