View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0786_high_6 (Length: 433)
Name: NF0786_high_6
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 30 - 423
Target Start/End: Original strand, 34484320 - 34484713
Alignment:
| Q |
30 |
attttgacaaatttattcttttattataattttttgattgaaataacatcaattaaaatcgcaacataaagttttagagaacatcaatctgataaactaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34484320 |
attttgacaaatttattcttttattataattttttgattgaaataacatcaatcaaaatcacaacataaagttttagagaacatcaatctgataaactaa |
34484419 |
T |
|
| Q |
130 |
gtgcgacaatcttttcatccatttccttcatatttttctcaattatcttatcaagttctttcaaatctgaaacggtcaaatcatccggcatgttttgcat |
229 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34484420 |
gtgcgacaatcttttcatccaattccttcatatttttctcaattatcttatcaagttctttcaaatctgaaacggtcaaatcatccggcatgttttgcat |
34484519 |
T |
|
| Q |
230 |
gtaatttttcatacgaatcttttgctccttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagtaatctgctgcaaaagaaaagtt |
329 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34484520 |
gtaatttttcattcgaatcttttgctccttctcacgattgtcttgtgtcagctttctcagttgttccctagctttagtaatctgctgcaaaagaaaagtt |
34484619 |
T |
|
| Q |
330 |
tcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctg |
423 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
34484620 |
tcttggttcacattctttttatcatctttcatatatgatttctgatacctctcaagcacctgtttgactccatctagatttggccacacctctg |
34484713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 30 - 423
Target Start/End: Original strand, 34498414 - 34498812
Alignment:
| Q |
30 |
attttgacaaatttattcttttattataattttttgattgaaataacatcaattaaaatcgcaacataaagttttagagaacatcaatctgataaactaa |
129 |
Q |
| |
|
|||||||||| |||| | |||||||| |||||| ||||||||||||||||| |||||| |||||||| |||||||| ||||||| | ||||||||||| |
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|
| T |
34498414 |
attttgacaagtttact-ttttattagaattttccaattgaaataacatcaataaaaatcacaacataaggttttagaaaacatcagtttgataaactaa |
34498512 |
T |
|
| Q |
130 |
gtgcgacaatcttttcatccatttccttcatatttttctcaattatcttatcaagttctttcaaatctgaaacggtcaaatcatccggca------tgtt |
223 |
Q |
| |
|
||| | ||||| ||||| ||||| ||||||||||| ||||| |||||| | ||| ||||||| ||||| |||| |||||| |||| |||| |
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|
| T |
34498513 |
gtgaagccatcttgtcatcaatttctttcatattttttgtaattaacttatccaagtctctcaaatcagaaacagtcatatcatctggcaccgtgttgtt |
34498612 |
T |
|
| Q |
224 |
ttgcatgtaatttttcatacgaatcttttgctccttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagtaatctgctgcaaaaga |
323 |
Q |
| |
|
||||| ||| |||||||||| || |||| |||||||||||||||||| | |||||||||| || ||||||||||||| |||||| |||||||| |
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|
| T |
34498613 |
ttgcaggtaccaaatcatacgaatgttcagctcattctcacgattgtcttgtctttgctttctcagttggtccctagctttagcaatctgttgcaaaagg |
34498712 |
T |
|
| Q |
324 |
aaagtttcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctg |
423 |
Q |
| |
|
||| |||| ||||||||||| ||| | |||||||||||| |||| ||||||||||||||||||||||||||| || | | ||||||||||||| ||||| |
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|
| T |
34498713 |
aaactttcctggttcacattttttctctcatctttcatatatgagttctgatacctctcaatcacctgtttggcttccttcagatttggccacacctctg |
34498812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 136 - 422
Target Start/End: Original strand, 37920761 - 37921053
Alignment:
| Q |
136 |
caatcttttcatccatttccttcatatttttctcaattatcttatcaagttctttcaaatctgaaacggtcaaatcatccggca------tgttttgcat |
229 |
Q |
| |
|
||||||| | ||| || |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||| ||||||||| |||||| ||| |
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|
| T |
37920761 |
caatcttgttatcaatctccttcatatttttctcaattagcttatcaaactctttcaaatccgaaacggtcaaaccatccggcagctttttgtttttcat |
37920860 |
T |
|
| Q |
230 |
gtaatttttcatacgaatcttttgctccttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagtaatctgctgcaaaagaaaagtt |
329 |
Q |
| |
|
||| ||||| |||| || |||||||||||||||||| || | ||||| ||||||||||| ||||| ||||| |||||| ||||| | |
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|
| T |
37920861 |
gtacccaatcataagaatgttcaactccttctcacgattgtcgtgcttttgcttttgaagatgttccctggctttgctaatcctctgcaatagaaagctc |
37920960 |
T |
|
| Q |
330 |
tcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgttt-gactccatctagatttggccacatctct |
422 |
Q |
| |
|
|||||||||||||||||| | |||||||||| ||||| || ||||||||||||||||| ||||| | |||| |||||||||||||||| |||| |
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|
| T |
37920961 |
tcttggttcacattctttgtttcatctttcaccgatgaattttgatacctctcaatcacatgtttagcctcc-tctagatttggccacacctct |
37921053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 34520006 - 34520200
Alignment:
| Q |
30 |
attttgacaaatttattcttttattataattttttgattgaaataacatcaa------ttaaaatcgcaacataaagttttagagaacatcaatctgata |
123 |
Q |
| |
|
|||||||||| |||||| ||||||||||| ||||| |||||||||||||||| | |||||| ||||||||||||| ||| |||| |||| | ||| |
|
|
| T |
34520006 |
attttgacaattttatt-ttttattataaattttttattgaaataacatcaacatcaatcaaaatcacaacataaagtttaagacaacaacaatttcata |
34520104 |
T |
|
| Q |
124 |
aactaagtgcgacaatcttttcatccatttccttcatatttttctcaattatcttatcaagttctttcaaatctgaaacggtcaaatcatccggca |
219 |
Q |
| |
|
|||| ||||| |||||||| ||||| || |||||||| ||||||||||||| ||||||| ||| | ||||||| ||| ||||||||||| |||| |
|
|
| T |
34520105 |
aactgagtgcaacaatcttgtcatcaatctccttcatctttttctcaattagcttatcataatctcttaaatctgtaacagtcaaatcatcaggca |
34520200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 291 - 392
Target Start/End: Original strand, 34520278 - 34520379
Alignment:
| Q |
291 |
tgttccctagctttagtaatctgctgcaaaagaaaagtttcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacct |
390 |
Q |
| |
|
|||||||| | |||||||||||| |||||||||||| ||||||||| |||||| ||||| | | ||| ||| ||| || || |||||||||||||||| |
|
|
| T |
34520278 |
tgttccctggttttagtaatctgttgcaaaagaaaactttcttggtccacattatttttcttgtgtttgatatatgcattttggtacctctcaatcacct |
34520377 |
T |
|
| Q |
391 |
gt |
392 |
Q |
| |
|
|| |
|
|
| T |
34520378 |
gt |
34520379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 30 - 423
Target Start/End: Original strand, 3316904 - 3317301
Alignment:
| Q |
30 |
attttgacaaatttattcttttattataattttttgattgaaataacatcaattaaaatcgcaacataaagttttagagaacatcaatctgataaactaa |
129 |
Q |
| |
|
|||||||||| || ||| |||||||| |||||| ||||||||||||||||| |||||| ||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
3316904 |
attttgacaagttaatt-ttttattagaattttccaattgaaataacatcaataaaaatcacaacataaa-ttttagaaaacatcaatttgataaactaa |
3317001 |
T |
|
| Q |
130 |
gtgcgacaatcttttcatccatttccttcatatttttctcaattatcttatcaagttctttcaaatctgaaacggtcaaatcatccggca------tgtt |
223 |
Q |
| |
|
||| | ||||| ||||| ||||||||||||||||| ||||||| |||||| | ||||||||||| |||||||||| |||||| |||| |||| |
|
|
| T |
3317002 |
gtgaagccatcttgtcatcaatttccttcatatttttttcaattaacttatccaagtctttcaaatcagaaacggtcacatcatctggcagcttgttgtt |
3317101 |
T |
|
| Q |
224 |
ttgcatgtaatttttcatacgaatcttttgctccttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagtaatctgctgcaaaaga |
323 |
Q |
| |
|
||||| ||| |||| |||| || |||| |||||| ||||||| ||| | || ||||||| |||||| |||||||||||||| |||||||| |
|
|
| T |
3317102 |
ttgcaggtaccaaaacataagaatgttcagctcattctcatgattgtcgtgtctttgcattctcagctgttccttagctttagtaatcctttgcaaaagg |
3317201 |
T |
|
| Q |
324 |
aaagtttcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctg |
423 |
Q |
| |
|
||| |||||||||||||||| ||| | |||||||||||| |||| ||||||||||| |||||||||||||| || | | ||||||||||||| ||||| |
|
|
| T |
3317202 |
aaactttcttggttcacattttttctctcatctttcatatatgagttctgatacctttcaatcacctgttttgcttccttcagatttggccacacctctg |
3317301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 30 - 423
Target Start/End: Original strand, 9598298 - 9598696
Alignment:
| Q |
30 |
attttgacaaatttattcttttattataattttttgattgaaataacatcaattaaaatcgcaacataaagttttagagaacatcaatctgataaactaa |
129 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||| ||||||||||||||| | ||||| ||||||||||||||||| ||||| | | ||||||||||| |
|
|
| T |
9598298 |
attttgacaagtttatt-ttttattagaattttccaattgaaataacatcagtaaaaataacaacataaagttttagaaaacattagtttgataaactaa |
9598396 |
T |
|
| Q |
130 |
gtgcgacaatcttttcatccatttccttcatatttttctcaattatcttatcaagttctttcaaatctgaaacggtcaaatcatccggca------tgtt |
223 |
Q |
| |
|
||| | ||||| ||||| |||||||||| |||||| ||||| | |||||| | ||||||||||| ||||| |||| |||||| || | |||| |
|
|
| T |
9598397 |
gtgaagccatcttgtcatcaatttccttcagatttttttcaatcaacttatccaagtctttcaaatcagaaactgtcacatcatctggaagcttgttgtt |
9598496 |
T |
|
| Q |
224 |
ttgcatgtaatttttcatacgaatcttttgctccttctcacgattgtcttgtgtcagctttctcagatgttccctagctttagtaatctgctgcaaaaga |
323 |
Q |
| |
|
||| | ||| ||||| |||| || ||| |||||| ||||||| ||| | || ||||||| || ||||| ||||||||||||| ||||||||| |
|
|
| T |
9598497 |
ttgtaggtaccaaatcataagaatgttcaactcattctcatgattgtcgtgtctttgcattctcagttgctcccttgctttagtaatcttttgcaaaaga |
9598596 |
T |
|
| Q |
324 |
aaagtttcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctg |
423 |
Q |
| |
|
||| |||||||||||||||| ||| | ||||||||||| |||| |||||||||||||||||| ||||||| || | | |||||||||||||| ||||| |
|
|
| T |
9598597 |
aaactttcttggttcacattttttcttccatctttcatatatgagctctgatacctctcaatcatctgtttggcttcctttagatttggccacacctctg |
9598696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 300 - 417
Target Start/End: Original strand, 20849055 - 20849172
Alignment:
| Q |
300 |
gctttagtaatctgctgcaaaagaaaagtttcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactc |
399 |
Q |
| |
|
|||||||||||| |||||| || ||| | |||||||||||||||||| | |||||||||| ||||| ||||| |||||||||||||||||| || | | |
|
|
| T |
20849055 |
gctttagtaatcctctgcaataggaaactctcttggttcacattctttgtttcatctttcactgatgagttctggtacctctcaatcacctgtctggccc |
20849154 |
T |
|
| Q |
400 |
catctagatttggccaca |
417 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
20849155 |
tctctagatctggccaca |
20849172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 423
Target Start/End: Original strand, 20856145 - 20856238
Alignment:
| Q |
330 |
tcttggttcacattctttttatcatctttcatagatgatttctgatacctctcaatcacctgtttgactccatctagatttggccacatctctg |
423 |
Q |
| |
|
|||||||||| ||||||| | |||||||||| ||||| ||||| ||||| |||||||||||| || | || ||||||| |||||||| ||||| |
|
|
| T |
20856145 |
tcttggttcatattctttgtttcatctttcactgatgagttctggtacctttcaatcacctgtctggccccctctagatctggccacacctctg |
20856238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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