View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_1 (Length: 636)
Name: NF0786_low_1
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 190 - 605
Target Start/End: Original strand, 11038538 - 11038953
Alignment:
| Q |
190 |
agtcctttcttgtcattggctaatttttctttcgggacaattttgagacaattctatttgctggatatagcaatgttgtagaaaaaatatagttggaaga |
289 |
Q |
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| T |
11038538 |
agtcctttcttgtcattggctaatttttctttcgggacaattttgagacaattctattcgctggatatagcaatgttgtagaaaaaatatagttggaaga |
11038637 |
T |
|
| Q |
290 |
gaagatattaccaaaagtggtcaaccagatttattggtgaaaattaatcatcggtaagttcaataaatatcttacattagatgttaaatttgtcagacta |
389 |
Q |
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| T |
11038638 |
gaagatattaccaaaagtggtcaaccagatttattggtgaaaattaatcatcggtaagttcaataaatatcttacattagatgttaaatttgtcggacta |
11038737 |
T |
|
| Q |
390 |
accaacaacagtctatgacaaagcatacattagatgtattcttgattagtagtaaatagtttgttcttcaattacatgagggaacactaactcgaatgtg |
489 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11038738 |
accaactaatgtctatgacaaagcatacattagatgtattcttgattagtagtaaatagtttgttcttcaattacatgagggaacactaactcgaatgtg |
11038837 |
T |
|
| Q |
490 |
cttaactctaaaggatttagagcatgaaaggtactgcttccactatcttcagttcttcactaaacaaatgaataaatggttatacaagcactcctaattg |
589 |
Q |
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| T |
11038838 |
cttaactttaaaggatttagagcatgataggtactgcttccactatctccagttcttcactaaacaaatgaataaatggttatacaagcactcctaattg |
11038937 |
T |
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| Q |
590 |
agaattagtgaaaaga |
605 |
Q |
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| T |
11038938 |
agaattagtgaaaaga |
11038953 |
T |
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