View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_11 (Length: 419)
Name: NF0786_low_11
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_11 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 145 - 419
Target Start/End: Original strand, 39954823 - 39955097
Alignment:
| Q |
145 |
aatgaagcaatgaagctgagggaagaaacagatgaactcaagaaagggaatgaaacactgaagcttgaactcaagcacaaagatgatattagtaatgaac |
244 |
Q |
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| T |
39954823 |
aatgaagtaatgaagctgagggaagaaacagatgaactcaagaaagggaatgaaacactgaagcttgaactgaagcacaaagatgatattagtaatgaac |
39954922 |
T |
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| Q |
245 |
taatgaagttgaaggaggagatagaacgactcgagaaagagaatgaagcgcaaaaggctgaactcaaagagaaagataccatatgcaatgaggtagtgaa |
344 |
Q |
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| T |
39954923 |
taatgaagttgaaggaggagatagaacgactcgagaaagagaatgaagcgcaaaaggctgaactcaaagagaaagataccatatgcaatgaggtagtgaa |
39955022 |
T |
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| Q |
345 |
gttgagggaagagaatgaagctcagagagatgaactgaagcagaaagataccatttgcaatgaagtaatgaagtt |
419 |
Q |
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| T |
39955023 |
gttgagggaagagaatgaagctcagagagatgaactgaagcagaaagataccatttgcaatgaagtaatgaagtt |
39955097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 39954913 - 39954971
Alignment:
| Q |
94 |
agtaatgaactaatgaagttgaaggaggagatagaacgactcgagaaagagaatgaagc |
152 |
Q |
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| T |
39954913 |
agtaatgaactaatgaagttgaaggaggagatagaacgactcgagaaagagaatgaagc |
39954971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 156 - 356
Target Start/End: Original strand, 39954648 - 39954848
Alignment:
| Q |
156 |
gaagctgagggaagaaacagatgaactcaagaaagggaatgaaacactgaagcttgaactcaagcacaaagatgatattagtaatgaactaatgaagttg |
255 |
Q |
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| T |
39954648 |
gaagttgagggaagaaatagaacaactgaagaaagtgaataatgcacagaaggatggactcaatcagaaagataccatttgtaatgacgtaatgaagttg |
39954747 |
T |
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| Q |
256 |
aaggaggagatagaacgactcgagaaagagaatgaagcgcaaaaggctgaactcaaagagaaagataccatatgcaatgaggtagtgaagttgagggaag |
355 |
Q |
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| T |
39954748 |
agggacgagattaaacaactcgagaaagaaaatgaagcacagaagaatgaactcaagcagaaaggtaccatcaataatgaagtaatgaagctgagggaag |
39954847 |
T |
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| Q |
356 |
a |
356 |
Q |
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| T |
39954848 |
a |
39954848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 356
Target Start/End: Original strand, 39955031 - 39955106
Alignment:
| Q |
281 |
aagagaatgaagcgcaaaaggctgaactcaaagagaaagataccatatgcaatgaggtagtgaagttgagggaaga |
356 |
Q |
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| T |
39955031 |
aagagaatgaagctcagagagatgaactgaagcagaaagataccatttgcaatgaagtaatgaagttgagggaaga |
39955106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 358
Target Start/End: Original strand, 39954648 - 39954757
Alignment:
| Q |
249 |
gaagttgaaggaggagatagaacgactcgagaaagagaatgaagcgcaaaaggctgaactcaaagagaaagataccatatgcaatgaggtagtgaagttg |
348 |
Q |
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| T |
39954648 |
gaagttgagggaagaaatagaacaactgaagaaagtgaataatgcacagaaggatggactcaatcagaaagataccatttgtaatgacgtaatgaagttg |
39954747 |
T |
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| Q |
349 |
agggaagaga |
358 |
Q |
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| T |
39954748 |
agggacgaga |
39954757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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