View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_12 (Length: 419)
Name: NF0786_low_12
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 30 - 408
Target Start/End: Original strand, 16463240 - 16463618
Alignment:
| Q |
30 |
gtcaagatgcagttgcaaagacttctaaaatcgcacgattgccatcacaatttaaaacacttattgaatgcaaaagcctaagggtgatttttaaacatct |
129 |
Q |
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| T |
16463240 |
gtcaagatgcagttgcaaagacttctaaaatcgcacgattgccatcacaatataaaaaacttattgaatgcaaaagcctaagggtgatttttaaacatct |
16463339 |
T |
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| Q |
130 |
ttgtataaaggaagaataatnnnnnnntaaaatggttcaaattattataattctatctgtaagttgattggaaacagttgaaaaataatataccattgat |
229 |
Q |
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| T |
16463340 |
ttgtataaaggaagaataataaaaaaataaaatggttcaaattattataattctatctgtaagttgattggaaacagttgaaaaataatataccatagat |
16463439 |
T |
|
| Q |
230 |
atgctcaacctatcatgttctgttacaggaaaccaactgcgacaattcttccaacaacggtagtttctagatacaggcctgcaccgattgttgcatcttt |
329 |
Q |
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| T |
16463440 |
atgctcaacctatcatgttctgttacaggaaaccaactgcaacaattcttccaacaacagtagtttctagatacaggcctgcacctattgttgcatcttt |
16463539 |
T |
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| Q |
330 |
ctcatcaagaggtccttcaagccttactgaaaacattctcaaggtaactttattccaagtgttcctatatgcagttcat |
408 |
Q |
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| T |
16463540 |
ctcatcaagaggtccttcaagccttactgaaaacattctcaaggtaactttattccaagtgttcctatatgcagttcat |
16463618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 247 - 376
Target Start/End: Original strand, 16493480 - 16493609
Alignment:
| Q |
247 |
ttctgttacaggaaaccaactgcgacaattcttccaacaacggtagtttctagatacaggcctgcaccgattgttgcatctttctcatcaagaggtcctt |
346 |
Q |
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||||||||||||||||||||||| |||||||||||||||| | | || ||||||| ||||||||||| ||||| ||||| |||||||| ||||| |||| |
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| T |
16493480 |
ttctgttacaggaaaccaactgcaacaattcttccaacaatagaaattcctagatataggcctgcaccaattgtggcatcattctcatctagaggccctt |
16493579 |
T |
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| Q |
347 |
caagccttactgaaaacattctcaaggtaa |
376 |
Q |
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||||||| || ||||||||||||||||||| |
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| T |
16493580 |
caagcctaacagaaaacattctcaaggtaa |
16493609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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