View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0786_low_13 (Length: 413)
Name: NF0786_low_13
Description: NF0786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0786_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 30195892 - 30195482
Alignment:
| Q |
1 |
cactggaagatccatacacaaaacttttcaatctctcactcactttggtcgctccaaattgaatacaagatggaggaatctgcataaagagagaacaatt |
100 |
Q |
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| T |
30195892 |
cactggaagatccatacacaaaacttttcaatctctcactcactttggtcgctccaaattgaacacaagatggaggaatctgcataaagagagaacaatt |
30195793 |
T |
|
| Q |
101 |
gctagggtaattaaatttcataaaattaattaagcaacaaatattgatttagatatatacctcagcatgaacaacatgaaggagtgaattatctccaacc |
200 |
Q |
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| T |
30195792 |
actagg-taattaaatttcataaaattaattaagcaacaaatattgatttagatatatacctcagcatgaacaacatgaaggagtgaattatctccaacc |
30195694 |
T |
|
| Q |
201 |
ttagaggaattaacactctttatgtctacattctcttcatgtaacacacgaattatttcatagaaaatgaattggctatctaacccacacgtgagaatga |
300 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30195693 |
ttagaggaattaacactccttatgtctacattctcttcatgtaacacacgaattatttcatagaaaatgaattggttatctaacccacacgtgagaatga |
30195594 |
T |
|
| Q |
301 |
tttgtagtgaagaaccaatttcgtgaatttcaaaacatggtgattttggtagatctaagcaatattcacgtgatcttttattctttcctgctaatagcct |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30195593 |
tttgtagtgaagaaccaatttcgtgaatttcaaaacatggtgattttggtagatctaagcaatattcacgtgatcttttattctttcctgctaatagcct |
30195494 |
T |
|
| Q |
401 |
ttgtttcttctc |
412 |
Q |
| |
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|| ||||||||| |
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| T |
30195493 |
ttctttcttctc |
30195482 |
T |
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